Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04030 ATGGCTTCAGCAAACCGCATGTTATCATGGAATGAACAAGACAAATCCATGCTTCAAACTGTTCTTGGTCCTCGAGCCTTTCATTTCTTGATAACTAATTGTTTATCAAACGAAACCATCTTAATCGCTGTTGGTAATGGAACTGCCACTGCTGATTCTCTTCAAAACAAACTCTCTGAACTTGTTGAAAATTCTTCCACTTTCAATTGGAACTACGCTATTTTCTGGCAACTCTCTCAATCAAAATCCGGCGATTATGTTCTTGGTTGGGGTGATGGATGTTGCAGAGAACCAAACGAAGAAGAACAACAAGAGAGTGAAAATCTTACCCTTCGAAGAAAGGTAGAAGAAGAAGAAGAAAGGGTTGAGCAGAATATGAGGAAGAGGGTTTTACAGAAGCTACACAAAGCTTTTGGTGGTTCTGACGAAGACAATTACGCTTTTGGCCTTGACCGTGTAACCGACACTGAGATGTTTTTTTTAGCTTCTATGTACTTTTCTTTTCCAAAAGGGTATGGTGGACCCGGTAAGTGCTTTGATTCTGCTCAAAATTTGTGGTTCAAATCTGTTTCTGATGATTACTGTGTTCGTTCTTTCTTGGCTAAATCTGCTGGAATTCAAACTGTTGTTTTACTACCTACTCATTTTGGTGTTCTTGAGTTGGGTTCCGTTAGAATCTTACCTCAAAGCTTTGAATTCTTGAACAATGTTAACTCATTGTTTTCACTTTCAAATTTGTCATCGTCCTTCTTGTTGTATCCTAGTATTAGTGCGACCAATGAGGGAAGAGATGATGAAAGTGGAGTTTCTAATGGTGTTCATGTTCCACCAAAGGTTGGTTTGAATTTGAACAATGGTTGTTCGCATTTTCGAGAGAAACTTGCTATTAGGAAAATGGATAGTACTAGTAGCATTCACTTTCCTAGTTCTAGAAATCGTGTTTCTGGTTCTACTAGTTGGGGAAAGAATCAAGTTCTAGGTGAAGTTTTTGGTTCTAGTAATGGTGTGAGAAAGGGCTTTAGTAACTATCAACCACAAAGGAAGCAGGTTCAAATGCAAATTGATTTTTCGGGAGCGAAATCGAGGGCTAATTCTGTGAGACCGGTTATTGGTGAATCGGAAGTTGCTGCTGCTGATGTCGACGCTGATCGGCCTAATGATGAAAGGAGGCCGAGGAAACGCGGAAGGAAGCCTTCTAGTGGAAGGGATGAGCCTCTCAATCACGTGGAAGCGGAGAGACAGAGACGCGAGAAGCTTAATCAACGTTTTTACGCCTTAAGAGCTGTTGTGCCGAATATTTCCAAGATGGACAAAGCATCTCTACTTGGTGATGCCATTGCTTACATCAACGAGCTTCAAGCAAAACTCAAGATCATGGAGTCTGAGAAAGAGACATTCGGAAGCAACACTTCGAGGGATGGATCAGCCAACTCAAGAGCAGAGCATTGCCATCAAGTTCCTCCTAACGACGTTGATATTCAAGCTTCTCAGGACGAAGTAATTGTGAAGGTGAGTTGTCCTATTGATACTCATCCTATTTCAAAAGTAATCAAAACATTCAAAGATGCACAAATCGGTGTAGTTGAGTCAAAGCTCACTGCGGCAAACGATACAATCTATCATACCTTTGTAATTAAGTCAGAAGAACCCGAACAACTCACCAAGGACAAGTTGATTGCAGCATTTTCCGGCGAATCCGTCTCGTTACAAACACAAACTTTGTCCATATAG 1731 0.4096 MASANRMLSWNEQDKSMLQTVLGPRAFHFLITNCLSNETILIAVGNGTATADSLQNKLSELVENSSTFNWNYAIFWQLSQSKSGDYVLGWGDGCCREPNEEEQQESENLTLRRKVEEEEERVEQNMRKRVLQKLHKAFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPKGYGGPGKCFDSAQNLWFKSVSDDYCVRSFLAKSAGIQTVVLLPTHFGVLELGSVRILPQSFEFLNNVNSLFSLSNLSSSFLLYPSISATNEGRDDESGVSNGVHVPPKVGLNLNNGCSHFREKLAIRKMDSTSSIHFPSSRNRVSGSTSWGKNQVLGEVFGSSNGVRKGFSNYQPQRKQVQMQIDFSGAKSRANSVRPVIGESEVAAADVDADRPNDERRPRKRGRKPSSGRDEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKIMESEKETFGSNTSRDGSANSRAEHCHQVPPNDVDIQASQDEVIVKVSCPIDTHPISKVIKTFKDAQIGVVESKLTAANDTIYHTFVIKSEEPEQLTKDKLIAAFSGESVSLQTQTLSI 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04030 576 FunFam Transcription factor bHLH13 396 470 - -
Vifa5g04030 576 Coils Coil 99 128 - -
Vifa5g04030 576 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 403 452 IPR011598 GO:0046983
Vifa5g04030 576 MobiDBLite consensus disorder prediction 361 415 - -
Vifa5g04030 576 SMART finulus 409 458 IPR011598 GO:0046983
Vifa5g04030 576 Coils Coil 449 469 - -
Vifa5g04030 576 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 54 241 IPR025610 -
Vifa5g04030 576 PANTHER MYC 39 561 IPR045084 GO:0003700|GO:0006355
Vifa5g04030 576 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 401 465 IPR036638 GO:0046983
Vifa5g04030 576 CDD bHLH_AtAIB_like 401 464 - -
Vifa5g04030 576 Pfam Helix-loop-helix DNA-binding domain 407 453 IPR011598 GO:0046983
Vifa5g04030 576 MobiDBLite consensus disorder prediction 377 415 - -
Vifa5g04030 576 Gene3D - 396 468 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04030 Vifa-Chr5 1280261552 1280263282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04030 8 575 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 45.942 6.72e-167 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa5g04030 bHLH-MYC_N 2.9e-50 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04030 - - tpra:123889557 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g04030 5 1280261552 1280263282 Vifa4g01041 4 300026882 300028798 PCT