Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04024 ATGGACTCTTTTTCTGGTGGCCGGCCGGAGAGTCGTGGCGGCGTCGCCGGAGAGAAACAAATCCCGAACGGAATTCAAGAGGCGAAGAAACTCAGATGCTACAGCAGGAGAAGGAAGATCGCCGATCTGAACAACGGATCGGAGTCGGTGCTCGATGGAAACTCCATCAGAAAGAAGAAGAAACCGATCGATCAAGAGAATGAAGGTGATTGTGGAAAGAGACTAGTTGATGTGTATAAGGTCAATAAAGCTAAGAATGGAGTTAAAGATACCAAACAACGGGTTTCGCAGGGTTTATCCACCAAGACCAAGGAGGGTGGAAGTTTGATGTGCCATCAGTGCCAACGGAATGATAAGGGTGGTGTTGTCTTTTGCTCAAGTTGCAACAGAAAGCGTTATTGTTTTGAATGCATTAAGAACTGGTATCCAGGAAAAACCCATGAGGAGTTTGAGAATGCGTGTCCATTTTGTTGGGGAAATTGCAACTGCAAAGCTTGCTTGCGGGAGTTTCCTGCACAAATGGACCGAAAAGTAGATGCCAGTGTCAAATTACAGCGACTGCTGCACTTACTATCTAAAGCCCTGCCAGTTCTGAGGCATGTCCACAAGGAGCAGAGCTTGGAACTAGAGACTGAAACCAAAATAAGGGGTAAGCAACTGCAAGAAATTGACATAACAAGATCAAAGCTAAGTGAAAGTGAGCGCTTGTACTGTGACAATTGCAGTACATCCATACATGGATTTTACCGTAGCTGTCCCAACACCAGTTGCTCTTATGATCTCTGTCTCATGTGCTGTCAAGAGCTCAGAGAGGGTTACCAACCTGGAGGCATGGAGGCTGGAACATCTCATGAAAATTTTGAAAAGACTTTTCACAATCATGGTTCAACAAAAAACCAGAGTAAAACTCATCGTAGAAGATATGACTGGGAAAGCGAACTTGCACCTACTAGTTTACCTTCTCAGTCTGACATGCTCTCTCCCTTCCCAGAATGGAAAGCTAATAGTGATGGTAACATTCCATGTCCTCCAAAGCAGCGTGGAGGTTGTAGTTCTGCATTGCTTGAACTGAGACGCATTTACAAAGCTAATTGGGTGGCAAAGCTGCTAAATAATGCTGAAGATCTCACTAGAAATTATGCGCCTCTGGATGTAGATATTACTGAAAAGTGTTCTTTATGCCAGCTAAGTTTGTTAGAAGGAAAAATCAATCCTGAAGTCAGGAGAGCAGCATTCCGCGATGACAATAAAGATAACTTCTTATATAGTCCAAATGCCCTTGATATTTCTGATGATGAGATCGAGCACTTCCAGAGGCATTGGATGAGGGGAGAACCTGTGGTTGTGAGAAATGTTCTGGCCAAAACATCTGGTCTTAGTTGGGAACCAATGGTAATGTGGAGGGCCCTCAGAGAAACAGGTTCCAAAGTGAAGTTTAAAGAGGAAACACAAAGTGTCAAGGCTGTTGATTGCTTGGATTGGTGCGGGGTTGAAATAAATATACACCAGTTTTTCCAAGGCTACCTAAAGGGTCGAATGCATAAAAATAAGTGGCCAGAAATGTTGAAATTAAAAGATTGGCCTTCATCGACCTCTTTTGAAGAGCGCTTGCCGAGGCATGGTGCTGAATTCCTTGCTGCACTCCCGTATATGGACTACACTGATCCAAAATCGGGTCTTTTAAATTTTGCCAGTAAACTTCCTAATGGCTCATTGAAACCAGATTTGGGACCCAAAACATACATTGCTTATGGATTTTCTGAAGAGCTTGGCAGAGGAGATTCTGTTACAAAACTGCACTGCGATGTGTCTGATGCGGTGAATGTGCTGACACACACAAACAAGGTGAATATAGAGGACTGGCAGAGAGAAAGCATAAATAAATTGAAGAAGTCATATGATAGAGAAGACTGTTTAGAACTTTATCATGAATCTGAGGCTGGTAATCCCAAGATAGAGTCAAAACAAGACAATGGGAGAGATTCCTTGAACATTGATAATGAAGCTGAGACTGTCCTTGGTGGTGCTGTTTGGGATATCTTCCGTCGGGAAGATGTCCCAAAGTTAATTGAGTACGTAAGAAAGCACGAGAAGGAATTTCGCCATATCAAGAATGAACTAGTTGATTCGGTTATACATCCCATTCATGATCAGACTATATTCTTAAATGCGAGGCACAAGAAACAGCTAAAAAAAGAATATAATGTTGAACCATGGACTTTCGAGCAACACCTTGGCGAGGCTGTTTTCATTCCAGCAGGATGTCCTCATCAAGTGAGAAATAGACAGTCTTGTATGAAGGTTGCACTTGACTTTGTTTCGCCGGAAAATGTTGGAGAATGTTTACGACTAACAGAAGAGTTTCGTTTACTCCCAAAGTACCACAGAGCGAAGGAGGACAAATTGGAGGTTAAAAAGATGAGCCTTTATGCTGTAAGTAATGCTGTTAGACAAGTTAAAGAACTGATGATGGAGGCTAATAAGCAAGATTGA 2493 0.4268 MDSFSGGRPESRGGVAGEKQIPNGIQEAKKLRCYSRRRKIADLNNGSESVLDGNSIRKKKKPIDQENEGDCGKRLVDVYKVNKAKNGVKDTKQRVSQGLSTKTKEGGSLMCHQCQRNDKGGVVFCSSCNRKRYCFECIKNWYPGKTHEEFENACPFCWGNCNCKACLREFPAQMDRKVDASVKLQRLLHLLSKALPVLRHVHKEQSLELETETKIRGKQLQEIDITRSKLSESERLYCDNCSTSIHGFYRSCPNTSCSYDLCLMCCQELREGYQPGGMEAGTSHENFEKTFHNHGSTKNQSKTHRRRYDWESELAPTSLPSQSDMLSPFPEWKANSDGNIPCPPKQRGGCSSALLELRRIYKANWVAKLLNNAEDLTRNYAPLDVDITEKCSLCQLSLLEGKINPEVRRAAFRDDNKDNFLYSPNALDISDDEIEHFQRHWMRGEPVVVRNVLAKTSGLSWEPMVMWRALRETGSKVKFKEETQSVKAVDCLDWCGVEINIHQFFQGYLKGRMHKNKWPEMLKLKDWPSSTSFEERLPRHGAEFLAALPYMDYTDPKSGLLNFASKLPNGSLKPDLGPKTYIAYGFSEELGRGDSVTKLHCDVSDAVNVLTHTNKVNIEDWQRESINKLKKSYDREDCLELYHESEAGNPKIESKQDNGRDSLNIDNEAETVLGGAVWDIFRREDVPKLIEYVRKHEKEFRHIKNELVDSVIHPIHDQTIFLNARHKKQLKKEYNVEPWTFEQHLGEAVFIPAGCPHQVRNRQSCMKVALDFVSPENVGECLRLTEEFRLLPKYHRAKEDKLEVKKMSLYAVSNAVRQVKELMMEANKQD 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04024 830 SMART cupin_9 537 789 IPR003347 -
Vifa5g04024 830 FunFam Transcription factor jumonji domain-containing protein 418 798 - -
Vifa5g04024 830 ProSiteProfiles Zinc finger RING-type profile. 111 157 IPR001841 -
Vifa5g04024 830 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 60 826 IPR045109 GO:0032454|GO:0033169
Vifa5g04024 830 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 109 172 IPR018866 -
Vifa5g04024 830 ProSiteProfiles JmjC domain profile. 556 789 IPR003347 -
Vifa5g04024 830 Gene3D Cupin 424 798 - -
Vifa5g04024 830 MobiDBLite consensus disorder prediction 53 68 - -
Vifa5g04024 830 MobiDBLite consensus disorder prediction 44 68 - -
Vifa5g04024 830 Pfam JmjC domain, hydroxylase 674 772 IPR003347 -
Vifa5g04024 830 SUPERFAMILY Clavaminate synthase-like 434 807 - -
Vifa5g04024 830 CDD cupin_RmlC-like 713 761 - -
Vifa5g04024 830 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04024 Vifa-Chr5 1279383748 1279393152 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa5g04024 JmjC 5e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04024 K15601 - mnt:21406261 988.408