Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04014 ATGACCATCGAGCGTGATTTGAAATCTGTAATTCAGAATCTGAAGCGATCTAAGCTAGAAGAAGAAGACAGAGACTCTGCATCTCCATCGCTTCAGAAGAAGCCGAAAGCGAATAATTGCTTCGGTGGTACCGAGGACTTGATCGGAGGTTCTCTCTGTGGATCCACTGAAGGATTCAATTGCAGTGCTGGTGGCGGTGGTGGTGGTGAGGTTCATTCCAATTCCGATCCTGATTTCAGTTCCAATTCAAATTCGGCTTTGATGGAGTTGAATGCTATTAGTGGAGAAGCTCCTTTGTTGCCGCGATCATCGAGAGGTCGCGTTCAGAAGCTTCCGACTAAGTTCAATGATTCGGTACTTTTCGATTCACGGAAGAAGAATACTAATGGAGGAATCAAAAGATTTGGATTAGGGTTTGAAGTTGGTAACAGTTCGCGAGAGAGTGGATCGGGATTTGGGAAAAAAGGGAAGGAAATCAAATGTGATTCGAAAACAGAGAGTGATAATGGATTTTATGAGTTTGGCTGTGACAAGAATGCTGAGTCCTTTAAGAGCATTAAAACAACGGTGAGTGGGAGTCGTTTGCCGTTGGTTAAAACAGAGAGTGAAAATGGTTTTGATGAGAAGGGTAAAAAGGAGGAAGAGGTTTTCGAGCTTGAGGAATTTGGTTTGGGTGATATGGTTTGGGTAAAATGTGGCAAGAGTAATCTGGCATGGCCTGCGGTGGTGATTGATCCTATCTCGCAAGCGCCTGAGTCTGTTCTCAGACAATGTGTTCCTGGTGCGCTTTGTGTTATGTTTTTTGGTTATTCGAATCAAAAGCAAAGGAACTATTTGTGGGCGAAGCAAGGGATGGTATTACCCTTCTTGGAATTCATGGATAGATTTCAGGGGCAGACCCGAATATATAAGAGCCGACATAGCGATTTTCACAAGGCAATGGAGGAAGCGATGTTGGCGAGCAGCGACATCCTAGACCCACATTTCCGAGCTCAGGAAAATGTGGAGGGTGAGGGTTCCTGTGCTGGTCAGGAATATCATTGCCAAGACCAGGATATAATATTTTGTTATGGCTGTGGTTTGACTTTGCCATGCGAAACCATGGAGAAGATTAAGGATTCAAGCTGTGCTCCTCCGCATTATTGTAAACCTTGTGCAATGCTACTTAAATCAAAACAATACTGTGGCATTTGCAAAAAGGTTTGGCACCTTTTAGGCGCTGATGATTGGGTACGCTGCGACAGTTGTTATGTTTGGGTGCATGCTGAGTGTGAAAACATTTCCAGAAAACTTTTCAAGGATCTGAAAAATATACAATACCATTGCCCAGACTGCAAGGGAAAGAAGGAACGTAAATTATCAGCAGCACAAACAAACGAATCAAAAATTAAGGACAGGTCAGTAGAGAAAAACCAAAAACCCGTGCTACCTGAAACGCTAGCGGTGGTGTGCAATCACACGAAAGGAATTTACTTTCCAAGGCTTCATCAAGTTATGTGTGAGTGTGGCTCGTGTGGGTCAAAGAAGCAGGCATTGCCAGAATGGGAACGACATGTGGGTTGCAGAGCCAAAAAATGGAGACTCAGTGTGAAAGTAGAAAGCACAATGCAACCGCTAATAAATTGGATCACGGAACTCAATTCCCAAGCTGGAATTCCCTCGCAGTTAGATCAGAAACAGGTGCTTTCCTTTTTGCAAGAGAAGTATGAGCCAGTTTATGCCAAATGGACAACAGAGAGATGTGCGATATGCAGATGGGTTGAAGATGAAGACGTTAACAATATTATCATCTGTAACAGGTGCCAAATTGCAGTCCACCAAGCGTGCTATGGGGCAAGGCAGGTCCAAGATTTTAGTTCATGGGTTTGCAGAGTGTGTGAAACTCCTGATGTAGAAAGAGAGTGTTGCCTCTGTCCAGTTAAAGGTGGTGCACTAAAGCCAACTGATGTTGAGTTGCTGTGGGTTCATGTAACATGCGCTTGGTTTCGGCCTGAAGTTTCTTTTGAAGACGAAAACGCAATGGAACCTGCTTCTGGAATCCTTAAGATTCCTCCTAATTCCTTTTTGAAGACTTGCGTGATTTGTAAACAAAGCCATGGTTCCTGTACACGTTGTTGCAAGTGTGAGACATATTTTCATGCGATGTGTGCATCAAGAATGGGATATAGCATGACTGTGCGTACTACAGAGAAGAAGGGAACTCAAATAACAAAGAACTCAATATATTGTGCAGTTCACAGGGTCCCAAATCCAGATTCAGGAGTGTTTATGTATCCACCCCTAAGGGCAATCTCTCCAAGAACTTCGTTTCAAAATCACAAGGGACGCAATAGAGAATCAAAGCTTATTTCATCAAATAGTATAGAACTCCTTGAACCTTCAGCTTCTGAAAGTTATGAGGTCAAGTTACTATCTGCTGCCAGGTGTCGTGTTTACAGAAAGTCTCCCAATAAGAAGGACTGTACGCCAATAATTCACTTGCTTGGGGGGCCAAACATTCATTCTTTAAGTGCAATAACTCAGTTAAACGGAAGCACGGATGTTGCTGAAGTATTTTCTTCATTTAAGGAACGCCTTCACCACTTACAGAAAACGGAAAATTATAGAGTTTGCCTTGGAAAATCAGCTATTCAAGGGTGGGGCCTCTTTGCTCGTAGAGATTTGCAAGAAGGGGACATGGTTGCTGAGTATCGTGGTGAGCAAATAAGGGGTAATCTTCAGGATTCAAGGGAAGCAAGACACCGGTTAGAAGGCAAAGATTGTTATAAATGTAATCAATTTGATTGCATTTTAATGTGTTTGAAATATAAGAATTGA 2817 0.4288 MTIERDLKSVIQNLKRSKLEEEDRDSASPSLQKKPKANNCFGGTEDLIGGSLCGSTEGFNCSAGGGGGGEVHSNSDPDFSSNSNSALMELNAISGEAPLLPRSSRGRVQKLPTKFNDSVLFDSRKKNTNGGIKRFGLGFEVGNSSRESGSGFGKKGKEIKCDSKTESDNGFYEFGCDKNAESFKSIKTTVSGSRLPLVKTESENGFDEKGKKEEEVFELEEFGLGDMVWVKCGKSNLAWPAVVIDPISQAPESVLRQCVPGALCVMFFGYSNQKQRNYLWAKQGMVLPFLEFMDRFQGQTRIYKSRHSDFHKAMEEAMLASSDILDPHFRAQENVEGEGSCAGQEYHCQDQDIIFCYGCGLTLPCETMEKIKDSSCAPPHYCKPCAMLLKSKQYCGICKKVWHLLGADDWVRCDSCYVWVHAECENISRKLFKDLKNIQYHCPDCKGKKERKLSAAQTNESKIKDRSVEKNQKPVLPETLAVVCNHTKGIYFPRLHQVMCECGSCGSKKQALPEWERHVGCRAKKWRLSVKVESTMQPLINWITELNSQAGIPSQLDQKQVLSFLQEKYEPVYAKWTTERCAICRWVEDEDVNNIIICNRCQIAVHQACYGARQVQDFSSWVCRVCETPDVERECCLCPVKGGALKPTDVELLWVHVTCAWFRPEVSFEDENAMEPASGILKIPPNSFLKTCVICKQSHGSCTRCCKCETYFHAMCASRMGYSMTVRTTEKKGTQITKNSIYCAVHRVPNPDSGVFMYPPLRAISPRTSFQNHKGRNRESKLISSNSIELLEPSASESYEVKLLSAARCRVYRKSPNKKDCTPIIHLLGGPNIHSLSAITQLNGSTDVAEVFSSFKERLHHLQKTENYRVCLGKSAIQGWGLFARRDLQEGDMVAEYRGEQIRGNLQDSREARHRLEGKDCYKCNQFDCILMCLKYKN 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04014 938 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 748 IPR013083 -
Vifa5g04014 938 SUPERFAMILY FYVE/PHD zinc finger 392 452 IPR011011 -
Vifa5g04014 938 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 575 629 IPR013083 -
Vifa5g04014 938 Pfam PHD-zinc-finger like domain 634 746 - -
Vifa5g04014 938 Gene3D SET domain 834 935 IPR046341 -
Vifa5g04014 938 SUPERFAMILY SET domain 859 934 IPR046341 -
Vifa5g04014 938 ProSiteProfiles Zinc finger PHD-type profile. 392 448 IPR019787 -
Vifa5g04014 938 CDD PHD_ATX3_4_5_like 580 626 IPR042011 -
Vifa5g04014 938 SUPERFAMILY FYVE/PHD zinc finger 579 643 IPR011011 -
Vifa5g04014 938 ProSiteProfiles Extended PHD (ePHD) domain profile. 632 747 IPR034732 -
Vifa5g04014 938 Pfam PHD-finger 593 627 - -
Vifa5g04014 938 PANTHER PHD FINGER PROTEINS 79 424 - -
Vifa5g04014 938 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 449 IPR013083 -
Vifa5g04014 938 MobiDBLite consensus disorder prediction 17 40 - -
Vifa5g04014 938 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 922 IPR025780 -
Vifa5g04014 938 SUPERFAMILY Tudor/PWWP/MBT 221 320 - -
Vifa5g04014 938 CDD PWWP_AtATX3-like 225 320 - -
Vifa5g04014 938 SMART PHD_3 580 627 IPR001965 -
Vifa5g04014 938 SMART PHD_3 394 446 IPR001965 -
Vifa5g04014 938 SMART PHD_3 691 747 IPR001965 -
Vifa5g04014 938 FunFam Histone-lysine N-methyltransferase 630 749 - -
Vifa5g04014 938 Gene3D - 218 324 - -
Vifa5g04014 938 Pfam PWWP domain 225 320 IPR000313 -
Vifa5g04014 938 ProSiteProfiles Zinc finger PHD-type profile. 578 629 IPR019787 -
Vifa5g04014 938 ProSitePatterns Zinc finger PHD-type signature. 581 626 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04014 Vifa-Chr5 1277735289 1277741576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04014 581 733 C2H2 Transcription Factor Family AT3G14740 33.951 1.79e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa5g04014 zf-HC5HC2H_2 3.1e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04014 - - lja:Lj1g3v5034780.1 1095.11