Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04013 ATGACCATCGAGCGTGATTTGAAATCTGTAATTCAGAATCTGAAGCGATCTAAGCTAGAAGAAGAAGACAGAGACTCTGCATCTCCATCGCTTCAGAAGAAGCCGAAAGCGAATAATTGCTTCGGTGGTACCGAGGACTTGATCGGAGGTTCTCTCTGTGGATCCACTGAAGGATTCAATTGCAGTGCTGGTGGCGGTGGTGGTGGTGAGGTTCATTCCAATTCCGATCCTGATTTCAGTTCCAATTCAAATTCGGCTTTGATGGAGTTGAATGCTATTAGTGGAGAAGCTCCTTTGTTGCCGCGATCATCGAGAGGTCGCGTTCAGAAGCTTCCGACTAAGTTCAATGATTCGGTACTTTTCGATTCACGGAAGAAGAATACTAATGGAGGAATCAAAAGATTTGGATTAGGGTTTGAAGTTGGTAACAGTTCGCGAGAGAGTGGATCGGGATTTGGGAAAAAAGGGAAGGAAATCAAATGTGATTCGAAAACAGAGAGTGATAATGGATTTTATGAGTTTGGCTGTGACAAGAATGCTGAGTCCTTTAAGAGCATTAAAACAACGGTGAGTGGGAGTCGTTTGCCGTTGGTTAAAACAGAGAGTGAAAATGGTTTTGATGAGAAGGGTAAAAAGGAGGAAGAGGTTTTCGAGCTTGAGGAATTTGGTTTGGGTGATATGGTTTGGGTAAAATGTGGCAAGAGTAATCTGGCATGGCCTGCGGTGGTGATTGATCCTATCTCGCAAGCGCCTGAGTCTGTTCTCAGACAATGTGTTCCTGGTGCGCTTTGTGTTATGTTTTTTGGTTATTCGAATCAAAAGCAAAGGAACTATTTGTGGGCGAAGCAAGGGATGGTATTACCCTTCTTGGAATTCATGGATAGATTTCAGGGGCAGACCCGAATATATAAGAGCCGACATAGCGATTTTCACAAGGCAATGGAGGAAGCGATGTTGGCGAGCAGCGACATCCTAGACCCACATTTCCGAGCTCAGGAAAATGTGGAGGGTGAGGGTTCCTGTGCTGGTCAGGAATATCATTGCCAAGACCAGGATATAATATTTTGTTATGGCTGTGGTTTGACTTTGCCATGCGAAACCATGGAGAAGATTAAGGATTCAAGCTGTGCTCCTCCGCATTATTGTAAACCTTGTGCAATGCTACTTAAATCAAAACAATACTGTGGCATTTGCAAAAAGGTTTGGCACCTTTTAGGCGCTGATGATTGGGTACGCTGCGACAGTTGTTATGTTTGGGTGCATGCTGAGTGTGAAAACATTTCCAGAAAACTTTTCAAGGATCTGAAAAATATACAATACCATTGCCCAGACTGCAAGGGAAAGAAGGAACGTAAATTATCAGCAGCACAAACAAACGAATCAAAAATTAAGGACAGGTCAGTAGAGAAAAACCAAAAACCCGTGCTACCTGAAACGCTAGCGGTGGTGTGCAATCACACGAAAGGAATTTACTTTCCAAGGCTTCATCAAGTTATGTGTGAGTGTGGCTCGTGTGGGTCAAAGAAGCAGGCATTGCCAGAATGGGAACGACATGTGGGTTGCAGAGCCAAAAAATGGAGACTCAGTGTGAAAGTAGAAAGCACAATGCAACCGCTAATAAATTGGATCACGGAACTCAATTCCCAAGCTGGAATTCCCTCGCAGTTAGATCAGAAACAGGTGCTTTCCTTTTTGCAAGAGAAGTATGAGCCAGTTTATGCCAAATGGACAACAGAGAGATGTGCGATATGCAGATGGGTTGAAGATGAAGACGTTAACAATATTATCATCTGTAACAGGTGCCAAATTGCAGTCCACCAAGCGTGCTATGGGGCAAGGCAGGTCCAAGATTTTAGTTCATGGGTTTGCAGAGTGTGTGAAACTCCTGATGTAGAAAGAGAGTGTTGCCTCTGTCCAGTTAAAGGTGGTGCACTAAAGCCAACTGATGTTGAGTTGCTGTGGGTTCATGTAACATGCGCTTGGTTTCGGCCTGAAGTTTCTTTTGAAGACGAAAACGCAATGGAACCTGCTTCTGGAATCCTTAAGATTCCTCCTAATTCCTTTTTGAAGACTTGCGTGATTTGTAAACAAAGCCATGGTTCCTGTACACGTTGTTGCAAGTGTGAGACATATTTTCATGCGATGTGTGCATCAAGAATGGGATATAGCATGACTGTGCGTACTACAGAGAAGAAGGGAACTCAAATAACAAAGAACTCAATATATTGTGCAGTTCACAGGGTCCCAAATCCAGATTCAGGAGTGTTTATGTATCCACCCCTAAGGGCAATCTCTCCAAGAACTTCGTTTCAAAATCACAAGGGACGCAATAGAGAATCAAAGCTTATTTCATCAAATAGTATAGAACTCCTTGAACCTTCAGCTTCTGAAAGTTATGAGGTCAAGTTACTATCTGCTGCCAGGTGTCGTGTTTACAGAAAGTCTCCCAATAAGAAGGACTGTACGCCAATAATTCACTTGCTTGGGGGGCCAAACATTCATTCTTTAAGTGCAATAACTCAGTTAAACGGAAGCACGGATGTTGCTGAAGTATTTTCTTCATTTAAGGAACGCCTTCACCACTTACAGAAAACGGAAAATTATAGAGTTTGCCTTGGAAAATCAGCTATTCAAGGGTGGGGCCTCTTTGCTCGTAGAGATTTGCAAGAAGGGGACATGGTTGCTGAGTATCGTGGTGAGCAAATAAGGGGTAATCTTCAGGATTCAAGGGAAGCAAGACACCGGTTAGAAGGCAAAGATTGTTATCTGTTCAAGATAAGTAAAGAAGTGGTAATAGATGCAACAAACAAGGGAAACATTTCACGTATTATAAACCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGAGTTTGAGCGATCAGGAGAGCGTGATTGTTCTTATTGCTAAAACCAATGTTTCTGCTGGTGAAGAACTAACATATGACTACTTGTTTAATAAAGACGAGCCGGAAGAACAAAAGGTTCCCTGTCGCTGCAGAACCCCAAAATGTAGAAAATTTATAAACTAG 3033 0.428 MTIERDLKSVIQNLKRSKLEEEDRDSASPSLQKKPKANNCFGGTEDLIGGSLCGSTEGFNCSAGGGGGGEVHSNSDPDFSSNSNSALMELNAISGEAPLLPRSSRGRVQKLPTKFNDSVLFDSRKKNTNGGIKRFGLGFEVGNSSRESGSGFGKKGKEIKCDSKTESDNGFYEFGCDKNAESFKSIKTTVSGSRLPLVKTESENGFDEKGKKEEEVFELEEFGLGDMVWVKCGKSNLAWPAVVIDPISQAPESVLRQCVPGALCVMFFGYSNQKQRNYLWAKQGMVLPFLEFMDRFQGQTRIYKSRHSDFHKAMEEAMLASSDILDPHFRAQENVEGEGSCAGQEYHCQDQDIIFCYGCGLTLPCETMEKIKDSSCAPPHYCKPCAMLLKSKQYCGICKKVWHLLGADDWVRCDSCYVWVHAECENISRKLFKDLKNIQYHCPDCKGKKERKLSAAQTNESKIKDRSVEKNQKPVLPETLAVVCNHTKGIYFPRLHQVMCECGSCGSKKQALPEWERHVGCRAKKWRLSVKVESTMQPLINWITELNSQAGIPSQLDQKQVLSFLQEKYEPVYAKWTTERCAICRWVEDEDVNNIIICNRCQIAVHQACYGARQVQDFSSWVCRVCETPDVERECCLCPVKGGALKPTDVELLWVHVTCAWFRPEVSFEDENAMEPASGILKIPPNSFLKTCVICKQSHGSCTRCCKCETYFHAMCASRMGYSMTVRTTEKKGTQITKNSIYCAVHRVPNPDSGVFMYPPLRAISPRTSFQNHKGRNRESKLISSNSIELLEPSASESYEVKLLSAARCRVYRKSPNKKDCTPIIHLLGGPNIHSLSAITQLNGSTDVAEVFSSFKERLHHLQKTENYRVCLGKSAIQGWGLFARRDLQEGDMVAEYRGEQIRGNLQDSREARHRLEGKDCYLFKISKEVVIDATNKGNISRIINHSCMPNCFARIMSLSDQESVIVLIAKTNVSAGEELTYDYLFNKDEPEEQKVPCRCRTPKCRKFIN 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04013 1010 SUPERFAMILY FYVE/PHD zinc finger 579 643 IPR011011 -
Vifa5g04013 1010 CDD PHD_ATX3_4_5_like 580 626 IPR042011 -
Vifa5g04013 1010 ProSiteProfiles Extended PHD (ePHD) domain profile. 632 747 IPR034732 -
Vifa5g04013 1010 MobiDBLite consensus disorder prediction 17 40 - -
Vifa5g04013 1010 SUPERFAMILY Tudor/PWWP/MBT 221 320 - -
Vifa5g04013 1010 CDD PWWP_AtATX3-like 225 320 - -
Vifa5g04013 1010 Gene3D - 218 324 - -
Vifa5g04013 1010 ProSiteProfiles SET domain profile. 868 985 IPR001214 GO:0005515
Vifa5g04013 1010 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 1010 IPR025780 -
Vifa5g04013 1010 Pfam PHD-zinc-finger like domain 634 746 - -
Vifa5g04013 1010 Gene3D SET domain 793 1010 IPR046341 -
Vifa5g04013 1010 ProSiteProfiles Zinc finger PHD-type profile. 578 629 IPR019787 -
Vifa5g04013 1010 SMART set_7 868 991 IPR001214 GO:0005515
Vifa5g04013 1010 ProSitePatterns Zinc finger PHD-type signature. 581 626 IPR019786 -
Vifa5g04013 1010 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 575 629 IPR013083 -
Vifa5g04013 1010 SUPERFAMILY SET domain 859 1010 IPR046341 -
Vifa5g04013 1010 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 748 IPR013083 -
Vifa5g04013 1010 ProSiteProfiles Zinc finger PHD-type profile. 392 448 IPR019787 -
Vifa5g04013 1010 Pfam SET domain 879 984 IPR001214 GO:0005515
Vifa5g04013 1010 PANTHER PHD FINGER PROTEINS 79 993 - -
Vifa5g04013 1010 Pfam PHD-finger 593 627 - -
Vifa5g04013 1010 FunFam Histone-lysine N-methyltransferase 630 749 - -
Vifa5g04013 1010 CDD SET_SETD1-like 857 1006 - -
Vifa5g04013 1010 SMART PHD_3 580 627 IPR001965 -
Vifa5g04013 1010 SMART PHD_3 394 446 IPR001965 -
Vifa5g04013 1010 SMART PHD_3 691 747 IPR001965 -
Vifa5g04013 1010 ProSiteProfiles Post-SET domain profile. 994 1010 IPR003616 -
Vifa5g04013 1010 Pfam PWWP domain 225 320 IPR000313 -
Vifa5g04013 1010 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 449 IPR013083 -
Vifa5g04013 1010 FunFam Histone-lysine N-methyltransferase 844 1010 - -
Vifa5g04013 1010 SUPERFAMILY FYVE/PHD zinc finger 392 452 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04013 Vifa-Chr5 1277729949 1277741576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04013 581 733 C2H2 Transcription Factor Family AT3G14740 33.951 1.44e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa5g04013 zf-HC5HC2H_2 3.4e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04013 - - lja:Lj1g3v5034780.1 1233.78