Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04012 ATGACCATCGAGCGTGATTTGAAATCTGTAATTCAGAATCTGAAGCGATCTAAGCTAGAAGAAGAAGACAGAGACTCTGCATCTCCATCGCTTCAGAAGAAGCCGAAAGCGAATAATTGCTTCGGTGGTACCGAGGACTTGATCGGAGGTTCTCTCTGTGGATCCACTGAAGGATTCAATTGCAGTGCTGGTGGCGGTGGTGGTGGTGAGGTTCATTCCAATTCCGATCCTGATTTCAGTTCCAATTCAAATTCGGCTTTGATGGAGTTGAATGCTATTAGTGGAGAAGCTCCTTTGTTGCCGCGATCATCGAGAGGTCGCGTTCAGAAGCTTCCGACTAAGTTCAATGATTCGGTACTTTTCGATTCACGGAAGAAGAATACTAATGGAGGAATCAAAAGATTTGGATTAGGGTTTGAAGTTGGTAACAGTTCGCGAGAGAGTGGATCGGGATTTGGGAAAAAAGGGAAGGAAATCAAATGTGATTCGAAAACAGAGAGTGATAATGGATTTTATGAGTTTGGCTGTGACAAGAATGCTGAGTCCTTTAAGAGCATTAAAACAACGGTGAGTGGGAGTCGTTTGCCGTTGGTTAAAACAGAGAGTGAAAATGGTTTTGATGAGAAGGGTAAAAAGGAGGAAGAGGTTTTCGAGCTTGAGGAATTTGGTTTGGGTGATATGGTTTGGGTAAAATGTGGCAAGAGTAATCTGGCATGGCCTGCGGTGGTGATTGATCCTATCTCGCAAGCGCCTGAGTCTGTTCTCAGACAATGTGTTCCTGGTGCGCTTTGTGTTATGTTTTTTGGTTATTCGAATCAAAAGCAAAGGAACTATTTGTGGGCGAAGCAAGGGATGGTATTACCCTTCTTGGAATTCATGGATAGATTTCAGGGGCAGACCCGAATATATAAGAGCCGACATAGCGATTTTCACAAGGCAATGGAGGAAGCGATGTTGGCGAGCAGCGACATCCTAGACCCACATTTCCGAGCTCAGGAAAATGTGGAGGGTGAGGGTTCCTGTGCTGGTCAGGAATATCATTGCCAAGACCAGGATATAATATTTTGTTATGGCTGTGGTTTGACTTTGCCATGCGAAACCATGGAGAAGATTAAGGATTCAAGCTGTGCTCCTCCGCATTATTGTAAACCTTGTGCAATGCTACTTAAATCAAAACAATACTGTGGCATTTGCAAAAAGGTTTGGCACCTTTTAGGCGCTGATGATTGGGTACGCTGCGACAGTTGTTATGTTTGGGTGCATGCTGAGTGTGAAAACATTTCCAGAAAACTTTTCAAGGATCTGAAAAATATACAATACCATTGCCCAGACTGCAAGGGAAAGAAGGAACGTAAATTATCAGCAGCACAAACAAACGAATCAAAAATTAAGTCAGTAGAGAAAAACCAAAAACCCGTGCTACCTGAAACGCTAGCGGTGGTGTGCAATCACACGAAAGGAATTTACTTTCCAAGGCTTCATCAAGTTATGTGTGAGTGTGGCTCGTGTGGGTCAAAGAAGCAGGCATTGCCAGAATGGGAACGACATGTGGGTTGCAGAGCCAAAAAATGGAGACTCAGTGTGAAAGTAGAAAGCACAATGCAACCGCTAATAAATTGGATCACGGAACTCAATTCCCAAGCTGGAATTCCCTCGCAGTTAGATCAGAAACAGGTGCTTTCCTTTTTGCAAGAGAAGTATGAGCCAGTTTATGCCAAATGGACAACAGAGAGATGTGCGATATGCAGATGGGTTGAAGATGAAGACGTTAACAATATTATCATCTGTAACAGGTGCCAAATTGCAGTCCACCAAGCGTGCTATGGGGCAAGGCAGGTCCAAGATTTTAGTTCATGGGTTTGCAGAGTGTGTGAAACTCCTGATGTAGAAAGAGAGTGTTGCCTCTGTCCAGTTAAAGGTGGTGCACTAAAGCCAACTGATGTTGAGTTGCTGTGGGTTCATGTAACATGCGCTTGGTTTCGGCCTGAAGTTTCTTTTGAAGACGAAAACGCAATGGAACCTGCTTCTGGAATCCTTAAGATTCCTCCTAATTCCTTTTTGAAGACTTGCGTGATTTGTAAACAAAGCCATGGTTCCTGTACACGTTGTTGCAAGTGTGAGACATATTTTCATGCGATGTGTGCATCAAGAATGGGATATAGCATGACTGTGCGTACTACAGAGAAGAAGGGAACTCAAATAACAAAGAACTCAATATATTGTGCAGTTCACAGGGTCCCAAATCCAGATTCAGGAGTGTTTATGTATCCACCCCTAAGGGCAATCTCTCCAAGAACTTCGTTTCAAAATCACAAGGGACGCAATAGAGAATCAAAGCTTATTTCATCAAATAGTATAGAACTCCTTGAACCTTCAGCTTCTGAAAGTTATGAGGTCAAGTTACTATCTGCTGCCAGGTGTCGTGTTTACAGAAAGTCTCCCAATAAGAAGGACTGTACGCCAATAATTCACTTGCTTGGGGGGCCAAACATTCATTCTTTAAGTGCAATAACTCAGTTAAACGGAAGCACGGATGTTGCTGAAGTATTTTCTTCATTTAAGGAACGCCTTCACCACTTACAGAAAACGGAAAATTATAGAGTTTGCCTTGGAAAATCAGCTATTCAAGGGTGGGGCCTCTTTGCTCGTAGAGATTTGCAAGAAGGGGACATGGTTGCTGAGTATCGTGGTGAGCAAATAAGGGGTAATCTTCAGGATTCAAGGGAAGCAAGACACCGGTTAGAAGGCAAAGATTGTTATCTGTTCAAGATAAGTAAAGAAGTGGTAATAGATGCAACAAACAAGGGAAACATTTCACGTATTATAAACCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGAGTTTGAGCGATCAGGAGAGCGTGATTGTTCTTATTGCTAAAACCAATGTTTCTGCTGGTGAAGAACTAACATATGACTACTTGTTTAATAAAGACGAGCCGGAAGAACAAAAGGTTCCCTGTCGCTGCAGAACCCCAAAATGTAGAAAATTTATAAACTAG 3027 0.4275 MTIERDLKSVIQNLKRSKLEEEDRDSASPSLQKKPKANNCFGGTEDLIGGSLCGSTEGFNCSAGGGGGGEVHSNSDPDFSSNSNSALMELNAISGEAPLLPRSSRGRVQKLPTKFNDSVLFDSRKKNTNGGIKRFGLGFEVGNSSRESGSGFGKKGKEIKCDSKTESDNGFYEFGCDKNAESFKSIKTTVSGSRLPLVKTESENGFDEKGKKEEEVFELEEFGLGDMVWVKCGKSNLAWPAVVIDPISQAPESVLRQCVPGALCVMFFGYSNQKQRNYLWAKQGMVLPFLEFMDRFQGQTRIYKSRHSDFHKAMEEAMLASSDILDPHFRAQENVEGEGSCAGQEYHCQDQDIIFCYGCGLTLPCETMEKIKDSSCAPPHYCKPCAMLLKSKQYCGICKKVWHLLGADDWVRCDSCYVWVHAECENISRKLFKDLKNIQYHCPDCKGKKERKLSAAQTNESKIKSVEKNQKPVLPETLAVVCNHTKGIYFPRLHQVMCECGSCGSKKQALPEWERHVGCRAKKWRLSVKVESTMQPLINWITELNSQAGIPSQLDQKQVLSFLQEKYEPVYAKWTTERCAICRWVEDEDVNNIIICNRCQIAVHQACYGARQVQDFSSWVCRVCETPDVERECCLCPVKGGALKPTDVELLWVHVTCAWFRPEVSFEDENAMEPASGILKIPPNSFLKTCVICKQSHGSCTRCCKCETYFHAMCASRMGYSMTVRTTEKKGTQITKNSIYCAVHRVPNPDSGVFMYPPLRAISPRTSFQNHKGRNRESKLISSNSIELLEPSASESYEVKLLSAARCRVYRKSPNKKDCTPIIHLLGGPNIHSLSAITQLNGSTDVAEVFSSFKERLHHLQKTENYRVCLGKSAIQGWGLFARRDLQEGDMVAEYRGEQIRGNLQDSREARHRLEGKDCYLFKISKEVVIDATNKGNISRIINHSCMPNCFARIMSLSDQESVIVLIAKTNVSAGEELTYDYLFNKDEPEEQKVPCRCRTPKCRKFIN 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04012 1008 CDD SET_SETD1-like 855 1004 - -
Vifa5g04012 1008 ProSiteProfiles Zinc finger PHD-type profile. 576 627 IPR019787 -
Vifa5g04012 1008 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 573 627 IPR013083 -
Vifa5g04012 1008 Pfam SET domain 877 982 IPR001214 GO:0005515
Vifa5g04012 1008 SUPERFAMILY SET domain 857 1008 IPR046341 -
Vifa5g04012 1008 Pfam PWWP domain 225 320 IPR000313 -
Vifa5g04012 1008 Pfam PHD-finger 591 625 - -
Vifa5g04012 1008 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 1008 IPR025780 -
Vifa5g04012 1008 MobiDBLite consensus disorder prediction 17 40 - -
Vifa5g04012 1008 ProSiteProfiles Extended PHD (ePHD) domain profile. 630 745 IPR034732 -
Vifa5g04012 1008 ProSitePatterns Zinc finger PHD-type signature. 579 624 IPR019786 -
Vifa5g04012 1008 SUPERFAMILY Tudor/PWWP/MBT 221 320 - -
Vifa5g04012 1008 CDD PWWP_AtATX3-like 225 320 - -
Vifa5g04012 1008 SUPERFAMILY FYVE/PHD zinc finger 392 452 IPR011011 -
Vifa5g04012 1008 FunFam Histone-lysine N-methyltransferase 842 1008 - -
Vifa5g04012 1008 Gene3D SET domain 791 1008 IPR046341 -
Vifa5g04012 1008 FunFam Histone-lysine N-methyltransferase 628 747 - -
Vifa5g04012 1008 CDD PHD_ATX3_4_5_like 578 624 IPR042011 -
Vifa5g04012 1008 Gene3D - 218 324 - -
Vifa5g04012 1008 Pfam PHD-zinc-finger like domain 632 744 - -
Vifa5g04012 1008 SMART PHD_3 394 446 IPR001965 -
Vifa5g04012 1008 SMART PHD_3 689 745 IPR001965 -
Vifa5g04012 1008 SMART PHD_3 578 625 IPR001965 -
Vifa5g04012 1008 ProSiteProfiles Zinc finger PHD-type profile. 392 448 IPR019787 -
Vifa5g04012 1008 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 746 IPR013083 -
Vifa5g04012 1008 ProSiteProfiles SET domain profile. 866 983 IPR001214 GO:0005515
Vifa5g04012 1008 ProSiteProfiles Post-SET domain profile. 992 1008 IPR003616 -
Vifa5g04012 1008 SUPERFAMILY FYVE/PHD zinc finger 577 641 IPR011011 -
Vifa5g04012 1008 SMART set_7 866 989 IPR001214 GO:0005515
Vifa5g04012 1008 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 449 IPR013083 -
Vifa5g04012 1008 PANTHER PHD FINGER PROTEINS 79 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04012 Vifa-Chr5 1277729949 1277741576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04012 579 731 C2H2 Transcription Factor Family AT3G14740 33.951 1.36e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa5g04012 zf-HC5HC2H_2 3.4e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04012 - - lja:Lj1g3v5034780.1 1236.86