Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04011 ATGAACTTCTTGAACTTCTTCTTTCACTTGTTCATATTATTTCCTGTCATGTATACTTTAGAAAACTCCTGTCAAAATTCTTGGTGTAGTGAGAATAACATCCTTATTCGTTTCCCTTTTCTATTAGAAGTTGAAGGTGATCAAGAAAATCCTTATTGTGGTTATCCGGGTTTCGAATTAAGTTGTACTAATGATAGCAGAACAATTCTAACACTCCCTTATTCAGAAGTGTTCTATGTTCGCGAAATCGATTACCTTCTACAATATATACAAGTCTATGACCCGCATCATTGCCTTCCAAATCGTCTTCTAAGTCTTAACCTTTCAGGTTCACCTTTCGTTACCAGATTTCTTACTAATTACACTCTCTTGAGCTGCTCAACTCCAAACATTGGATCACAGTTCATACCTGTTGACTGTCTAAGCAATTCTACACATTTTGTATCGGTTATTCCTTCCTTGAGCTTCACCAATTCATTGCCCGAGTCTTGCTTTATAGTTAGAAATCTCTCAGTTCCAAGTGATAGTTCATATCAGGATTTTTTCTTAAACAACCAGATCAGTGAGGATTTTGAACTAACATGGTCTTCACCGAATTGTAGATATTGCGAATTACAAGATGACATGTGTGGATTCGAGAGCAGAAATAGTGATCAAGTTCGCTGTTTCTCTAATCAACAAACAAATCATCAAACGGGTCATTCAAAAGACGACCTTTTGATTTCTAGAATCATCATATTATGTGTTGGAGGAACAGCTTTGTTGTGTGCAATTGGGACGGGATGCTTAGCATGCTACAGTCGCGGGAGGACAATATCAGATGAACCTGCCATTACCATCAACATTACAAGGATGGGGGTGGGTCTGGATGAGTCAACAATCGAATCTTTTGAGAAGATTGTATTAGGGGAGAGTCGAAGATTGCCGGGAGTGGAACACAATGATGGAACTGGATGTTGCCCAATATGTCTCTCCGAGTACAACAGCAAGGACATAATCAGATGCATTCCTGAATGTAGACACTGCTTCCATGCTCATTGCATTGATGAATGGCTTCGCATGAACACCACATGCCCAATTTGCCGTAACTCACCCTCTCCTCATTTTCCATGA 1113 0.3944 MNFLNFFFHLFILFPVMYTLENSCQNSWCSENNILIRFPFLLEVEGDQENPYCGYPGFELSCTNDSRTILTLPYSEVFYVREIDYLLQYIQVYDPHHCLPNRLLSLNLSGSPFVTRFLTNYTLLSCSTPNIGSQFIPVDCLSNSTHFVSVIPSLSFTNSLPESCFIVRNLSVPSDSSYQDFFLNNQISEDFELTWSSPNCRYCELQDDMCGFESRNSDQVRCFSNQQTNHQTGHSKDDLLISRIIILCVGGTALLCAIGTGCLACYSRGRTISDEPAITINITRMGVGLDESTIESFEKIVLGESRRLPGVEHNDGTGCCPICLSEYNSKDIIRCIPECRHCFHAHCIDEWLRMNTTCPICRNSPSPHFP 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04011 370 CDD RING-H2_EL5-like 319 362 - -
Vifa5g04011 370 Pfam Wall-associated receptor kinase C-terminal 182 226 IPR032872 -
Vifa5g04011 370 SMART ring_2 320 361 IPR001841 -
Vifa5g04011 370 Pfam Ring finger domain 320 362 IPR001841 -
Vifa5g04011 370 SUPERFAMILY RING/U-box 319 365 - -
Vifa5g04011 370 ProSiteProfiles Zinc finger RING-type profile. 320 362 IPR001841 -
Vifa5g04011 370 Pfam Wall-associated receptor kinase galacturonan-binding 24 94 IPR025287 GO:0030247
Vifa5g04011 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 367 IPR013083 -
Vifa5g04011 370 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 366 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04011 Vifa-Chr5 1277181047 1277182314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04011 24 367 C3H Transcription Factor Family AT2G46495 40.571 9.92e-77 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04011 - - tpra:123889576 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g04011 5 1277181047 1277182314 Vifa4g01028 4 297107001 297108684 PCT