Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04009 ATGAATGCTTTAAGACATAAATTTGTGAGGTTTGAGGATTGGAGATCAGAGTCATCTTTTAGTATAGAGCAGAAAGATTCTAATAACATAAGAAAAGAGAAACTAAGAATAAGTGATGTTTTGAAGAGTATTGGAAGAAAAGTTGAAAGTGGTTTAGAGAAGATGAAGAAATTCGGAAGAAGTTCTTCGGTGGTTCACCCTGTAAGTGAAGGACAAACAAAGAAATCGGTTTCTTCTAAGATCAAAATTCTTGATCCACAAGGGCCAATGCTTCAGAAATGGAACAAAATCTTTGTAATCACATGTGTAATGGCCATCTATGTAGACCCTCTTTTCTTTTACATTCCGGTGATTGTCGGTAAAAACAAATGTGTTGATTTGGATGAAGCATTGCAGACTACTGCCAGTGTTCTTCGCACGTTCTTCGATCTTTTCTACATTCTTCGCATCATCTTTCAGTTTAGAACCGGATTTATAGAACCTTTTTCTCTTGTTTTCGGAAGAGGTGAACTCATTGACGATCCCGTCGCCATAATGAAAAGATACTTGAGTTCTCATTTCATCATTGACATTCTATCAATTATTCCACTTCCACAGATTATTTGTTTGGCTATATTTCCACACATGAAAAATTCAGCTCCATTTGTAGCAAAGGATTTGTTGAAGTATGCAGTATTAATCCAGTATGTGCCGCGATTACTGCGGATTTGGCCATTATTCAAAGAAGTAACTAGAACTTCGGGCATATTGACAGAAACGGCATGGGCTGGAGCTGCTTACAATCTTTTTCTCTACATGCTTGCGAGTCATATGGTTGGAGCAAACTGGTATATACTTTCAGTAGAATCACAAGTGCGGTGCTGGCGCCGAGAGATGAACAAGGCTGAAAGCTTTCGCGAATCATACTTGGGCTGTGGACGGAAAAGCGAAACTGTCTTCAAACTTCTCAACAGTACATGTCTTTTGGTTGACCCTGATAATATTAATGACACAAACACTTTCAATTATGGAATATTTTTCGATGGTCTTCAATCCGGTGTGATAGACTCGACCACCGATTTTCCTCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTCTCGGACAAAACCTCAAGACAAGTACTTATGTGACAGAGATATCCTTTGCAATTTTCATTGCTGTCTTTGGATTGGTTTTATTCTCGTTACTCATCGGAAACATGCAGAAATATTTGCAATCTACAACAGTTAGGGTGGAAGAGATGAGAGTGCGAAGGAGGGATGCAGAATTGTGGATGTCGCATCGTATGTTACCTGATAACTTGAAGCAAAGGATTAGAAAGTATGAACAATACAAATGGCAGAAAAATCGAGGTGTTGAAGAAGAGACTTTAATTCTTAACCTCCCTAAAGATCTCAGAAGAGACATAAAGCGTCATCTTTGCTTAGCTTTAGTTAAGAAAGTGCCACTGTTTGAGAAAATGAATGAGCAATTGTTGGATGCAATGTGTGATAGATTGAAGCCAGTTCTGTATACAGAGAAGAGTTGCATTGTTCGCGAAGAAGATCCGGTTGATGAAATGCTTTTCATCATGCGTGGAAAAGTCGCTACTATGACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTATTTCTAATGCCTGGTGATTTTTGTGGAGAGGAGCTTTTAACATGGGCTTTGGATCCAAACTCGTCTTCAAATCTACCAACTTCAACTAGAACAGTAGAAACTATATCAGAAGTTGAAGCATTTGCACTCATGGCTGATGATTTGAAGTTTGTCGCTTCCCAATTTAGGCGTCTTATCAACAGCAAACAACTCCAGCACACTTTTAGGTCATATTCGCCGCAATGGAAGACATGGGGTGCGTGTTTCATACAAGCAGCATGGCGCCGATACTCGAAAAAGAAGATTGAGAGGACGTTGCGTGAAGCAGAAGACAAGCTACAAGATGCTTTGGCAAATGAGGAAGGTTCAACTATAAGCCTTGGTGCAACCATATATGCATCAAGGTTTGCTGCAAATGCATTAAGAAACTTGAGAAGAAATAACACACACAACAGAATGCAGGCGAGATTAATGCCTCTTTTGCCTCCAAAGCCAGCTGAGCCTGATTTCACAACTCAGAAACACTAG 2157 0.3959 MNALRHKFVRFEDWRSESSFSIEQKDSNNIRKEKLRISDVLKSIGRKVESGLEKMKKFGRSSSVVHPVSEGQTKKSVSSKIKILDPQGPMLQKWNKIFVITCVMAIYVDPLFFYIPVIVGKNKCVDLDEALQTTASVLRTFFDLFYILRIIFQFRTGFIEPFSLVFGRGELIDDPVAIMKRYLSSHFIIDILSIIPLPQIICLAIFPHMKNSAPFVAKDLLKYAVLIQYVPRLLRIWPLFKEVTRTSGILTETAWAGAAYNLFLYMLASHMVGANWYILSVESQVRCWRREMNKAESFRESYLGCGRKSETVFKLLNSTCLLVDPDNINDTNTFNYGIFFDGLQSGVIDSTTDFPQKFFYCFWWGLRNLSSLGQNLKTSTYVTEISFAIFIAVFGLVLFSLLIGNMQKYLQSTTVRVEEMRVRRRDAELWMSHRMLPDNLKQRIRKYEQYKWQKNRGVEEETLILNLPKDLRRDIKRHLCLALVKKVPLFEKMNEQLLDAMCDRLKPVLYTEKSCIVREEDPVDEMLFIMRGKVATMTTNGGRTGFFNSLFLMPGDFCGEELLTWALDPNSSSNLPTSTRTVETISEVEAFALMADDLKFVASQFRRLINSKQLQHTFRSYSPQWKTWGACFIQAAWRRYSKKKIERTLREAEDKLQDALANEEGSTISLGATIYASRFAANALRNLRRNNTHNRMQARLMPLLPPKPAEPDFTTQKH 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04009 718 FunFam Cyclic nucleotide-gated ion channel 1 487 605 - -
Vifa5g04009 718 SMART cnmp_10 489 620 IPR000595 -
Vifa5g04009 718 FunFam Cyclic nucleotide-gated ion channel 1 416 480 - -
Vifa5g04009 718 Gene3D - 97 413 - -
Vifa5g04009 718 SUPERFAMILY cAMP-binding domain-like 418 606 IPR018490 -
Vifa5g04009 718 SUPERFAMILY Voltage-gated potassium channels 85 411 - -
Vifa5g04009 718 Gene3D Jelly Rolls 487 607 IPR014710 -
Vifa5g04009 718 ProSiteProfiles cAMP/cGMP binding motif profile. 489 573 IPR000595 -
Vifa5g04009 718 CDD CAP_ED 489 609 IPR000595 -
Vifa5g04009 718 Gene3D Helix hairpin bin 416 480 - -
Vifa5g04009 718 Coils Coil 642 662 - -
Vifa5g04009 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 65 713 - -
Vifa5g04009 718 Pfam Ion transport protein 94 417 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa5g04009 718 Pfam Cyclic nucleotide-binding domain 510 599 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04009 Vifa-Chr5 1277001386 1277004402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04009 1 715 Ion Channels AT5G53130 63.085 0.0 905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04009 K05391 - gmx:100797784 1121.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g04009 5 1277001386 1277004402 Vifa4g01026 4 296846244 296849299 PCT