Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03979 ATGGCTCGCCACCTTGCTATCCCATTTATCATTATTGCTATTCTTATAAACCCTTCCCTGCTCGTATCTCCTGCACCACCTAACCACACACAAGGTACATGTGTATTGGATTTCAATGCATCCCAATTCGAGTATATGCCATTTGGTGAATGTGGAAGTGTGAAAGAAGACATAACCAACTGGGGTAGCACTAGTGATGGTTTCCCAAGCACTATATGCTGCAGAAACTCTCTTACCCTGCTCTCAGATGCCCTGGCCTCGCAAGTCCGCAACTCAACGGGACAAGTCTTCCTTTCTCAACAACAATGGCAAAGTTGCAACAAATCATTCCATCCACAACAAGGAATGTCACTATCTTCATGTGGCTTTGATAACATTTACTTTGGTAGCTCCAAATGCTCCAACTTAAATTTGCTAGAAGCTCAGAACTTGCAACAGTTCACAGATGCATTGGAAACATGCAGCCACTTTGACCATTCGTTCGAAGAATCGTGTTTGGGTTGCACAAGTGCCATTTTGAGCTTACGAGATGCTTTGTATGATACAGTGGTTGGCAAAGAAAACTACAATGATACCGAGAGAGCCATATGCGGTGTAGCAGCTCTTGTTTCTGTCGCTTTTGAACAACAAGATGATCCTTTCCTTGCAGACAAATTCTTGCGATGCTTTCCGCCTCCACCAGTATATCACAAAAAATCATCGATGAAGAAACTTGTGTTGGGAGTACTGGTGGTTGTTATCCTAGCATTATTGATTATTGTTTTTCTGGTAAAATGTGTATCGAAGAAAAAGCCTATTAAGAAGCATGCTCAGTTGAAACAGATAGCTACTTGGTCTGGACTTTACTGGTTCACGAAAACCGAAATTGAAAATGCGATGAACTTTGAAAATGAAAAGATAAACCTTGGACGCGGGAGTGCGGGCGAGGTGTATAGAGGCATTTTGCCTAGCGGACAAGTTGTGGCCATCAAGCATTTGATAAAGAGTAACACTTCCAGTTCTGATTCGTTCACGCGAGAACTTGCGGGTCTTTCTAGGCTTCGCCACCCGAACCTGGTTTGCTTGTTTGGTTGTTGCATGGAAGATGGTGAGAGATATTTAGTCTACGAGTTTTGCGCGAATGGAAATCTTGCTCAACATCTCTTGAGAAGAGATAGTCATTTGACTTGGGAAGCAAGAGTGAGGATTCTGAGAGAATGTTCATTTGCACTTAAGTATCTCCATCATCATATAGAGGGTTGTGTTGTACATAGAGATATCAAGCTTACAAACATTCTTTTGACTGAGAAATACGAAGCCAAACTCTCGGATTTCGGACTGTCAAGGATGATGGGAATGGAGGAGAGCAAGGTTTTTACTGATGTTAGAGGAACCATAGGTTATATGGATCCGGAGTACATGAGTAACGCCAAGCTAACTTGCGCGAGTGATGTATACAGTTTCGGAATTGTTGCTTTGCAAATTCTGTCAGGACAGAAAGTCATAGAATTGGATCTTGATGCTAGAGATCAACTCACCAGAAAGGCAAGAGATGTGAGTATCGGAAAGCGTCCACTGTCGGATTTTGTAGACTCGCGACTAAAGGGACAAGTTGATAAGACGGATTTCGGAGCTATTTTACAGATTGCAGTACTTTGTGTTGCAAAATCAAGCACGGGCCGTCCATCAATCGAGATTGTTTTTGACGAATTGGATAAAGTCTATAGGGACATAGAAGCACGCAAGAAGGCAACACCAACACCATCGACAACAACATCAACATCAACATCTAGCTCTAATTGA 1782 0.4248 MARHLAIPFIIIAILINPSLLVSPAPPNHTQGTCVLDFNASQFEYMPFGECGSVKEDITNWGSTSDGFPSTICCRNSLTLLSDALASQVRNSTGQVFLSQQQWQSCNKSFHPQQGMSLSSCGFDNIYFGSSKCSNLNLLEAQNLQQFTDALETCSHFDHSFEESCLGCTSAILSLRDALYDTVVGKENYNDTERAICGVAALVSVAFEQQDDPFLADKFLRCFPPPPVYHKKSSMKKLVLGVLVVVILALLIIVFLVKCVSKKKPIKKHAQLKQIATWSGLYWFTKTEIENAMNFENEKINLGRGSAGEVYRGILPSGQVVAIKHLIKSNTSSSDSFTRELAGLSRLRHPNLVCLFGCCMEDGERYLVYEFCANGNLAQHLLRRDSHLTWEARVRILRECSFALKYLHHHIEGCVVHRDIKLTNILLTEKYEAKLSDFGLSRMMGMEESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSIGKRPLSDFVDSRLKGQVDKTDFGAILQIAVLCVAKSSTGRPSIEIVFDELDKVYRDIEARKKATPTPSTTTSTSTSSSN 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03979 593 SUPERFAMILY Protein kinase-like (PK-like) 279 568 IPR011009 -
Vifa5g03979 593 SMART serkin_6 295 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03979 593 MobiDBLite consensus disorder prediction 572 593 - -
Vifa5g03979 593 Pfam Protein kinase domain 300 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03979 593 Gene3D Phosphorylase Kinase; domain 1 266 371 - -
Vifa5g03979 593 ProSiteProfiles Protein kinase domain profile. 296 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03979 593 FunFam probable receptor-like protein kinase At5g59700 372 582 - -
Vifa5g03979 593 Gene3D Transferase(Phosphotransferase) domain 1 372 587 - -
Vifa5g03979 593 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 63 580 - -
Vifa5g03979 593 Pfam SPARK 30 184 IPR043891 -
Vifa5g03979 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Vifa5g03979 593 MobiDBLite consensus disorder prediction 577 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03979 Vifa-Chr5 1268475304 1268478228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03979 284 578 Receptor kinase-like Gene Family AT1G16260 36.700 1.39e-56 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Vifa5g03979 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03979 - - gmx:100807158 763.451