Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03978 ATGAGTTGCTTTCCTTGTTTTAATTCTCAAAGGAGCAAGAAAAGCAACAGCAAGAGGGAACATGGGGTTGCGCCGCCGCAGGAAAACAACACCCTTATAACAAAAACACCAGATATAAAGAAACCAAAACCGGAGGAAACAACCCAAGTTGACACATCAAATATTCAAGCACAAAATTTCACATTTCGGGAGTTGGCGATTGCAACCAAGAATTTTAGACAAGAGTGTTTGATGGGAGAAGGTGGTTTTGGAAGAGTCTACAAAGGAACAATTCCTGCAACAGGACAGGTGGTAGCAGTGAAACAACTTGACAGAAATGGGATTCAAGGAAGTAAAGAATTTTTGGTTGAGGTTTTGATGTTGAGTCTCTTAAACCATGAAAATTTGGTTAAACTTATCGGTTATTGCGCTGATGGCGATCAGCGTCTTTTGGTGTACGAGTTCATGTCAGGAGGTTCTCTAGAAAGTTGTCTTCTCGAGAGAAAACCCGAGCAACCTCAATTAGATTGGTATAACAGAATGAAAATAGCATCAAACACTGCGAAAGGACTATGGTACTTGCACGACAAGGCAAATCCGTCGGTTATTTATAGGGATTTGAAATCTTCCAACATTTTGCTTGATAATGACCATAATGCAAAACTATCTGATTACGGACTAGCGAAACTTGCTGGTAAAGATAAGATGAACGTTGTTCCTACAAGAGTAATGGGCACTTATGGTTATAGTGCGCCCGAGTATGTAAGAACGGGTAATCTCACCTTGAAATCAGATGTGTATAGTTTTGGAGTTGTCTTGCTAGAACTCATAACTGGAAGACGAGCCGTTGACACCACAAAATCCCACGACGAGCAAAATCTAGTTTCATGGGCCCAACCGATATTTAGAGATCCAAAAAAATACGGAGACTTGGCAGATCCAAAGCTGAAATATTATCCTGACAAGGACCTGAATCAGGTTGTTGCAATTGCAGCCATGTGCTTACAGGAGGAAGCTGCTGCGCGTCCTTTGATGAGTGACGTTGTAACTGCTTTGAGTTTTCTTTCGACTTCTCCTCCTCCTGAAGGTGTTCCTGAACCTCTTCCACCTCCCAATTCCACTTCCCAAAAGAGTGTTTCCACTGCCAGTGAAAGTGAGAGTGAGGGCGAAGGCAATAAGAATAAATCGCCTATTGCAGCAGAGAGTGCAAAATACGAAGAATGTGAAGATGGATCAGACAATGAATGTGATTATTATGAGAATGAAAACCATGATTATAGTCCACAAGATACTAAAGAAACAAAAGAGTTTTACTCCCAATCAAGCCGCAAAAGCAGCACCAAATCAAAGAACTCGAGTTCAGGATCAGAAAATGGTCGCAAAAGCAGCAGGAGAAAGCAAGGCGCGGATGGTAGTTTATCTCAGAAAAGCAGCAAGAAACCGGCTGCAGGAGATTTAAGCCAGAAGAGCAGTAAGAAATCTCGCGCAAAGGATTTAAGCCAAAAGAAGAGTAAAAAATCATCAAAAGTTAAAAATCACTCGTCTGATAGCAGCAGTGACGAAGAGTCACAAGATGAAAGCGTTCTTCTCAAGCACGGTGACAGTAGGAAATCACAAGATGGAAAGGGATACTCTTTTGGGCTAATAAGCAGTGATAGCGGGGAAGGATCACATGTAGATGTTCATCATTTTAATCGTGTCAGCATGGGGCCATCTGAGGATGGAAGTTCTCAACATTTCGAACATTCCAGCAGCGGAGGATCAGATGAGGGAAGTGTTCATTCACCACGATAG 1773 0.4208 MSCFPCFNSQRSKKSNSKREHGVAPPQENNTLITKTPDIKKPKPEETTQVDTSNIQAQNFTFRELAIATKNFRQECLMGEGGFGRVYKGTIPATGQVVAVKQLDRNGIQGSKEFLVEVLMLSLLNHENLVKLIGYCADGDQRLLVYEFMSGGSLESCLLERKPEQPQLDWYNRMKIASNTAKGLWYLHDKANPSVIYRDLKSSNILLDNDHNAKLSDYGLAKLAGKDKMNVVPTRVMGTYGYSAPEYVRTGNLTLKSDVYSFGVVLLELITGRRAVDTTKSHDEQNLVSWAQPIFRDPKKYGDLADPKLKYYPDKDLNQVVAIAAMCLQEEAAARPLMSDVVTALSFLSTSPPPEGVPEPLPPPNSTSQKSVSTASESESEGEGNKNKSPIAAESAKYEECEDGSDNECDYYENENHDYSPQDTKETKEFYSQSSRKSSTKSKNSSSGSENGRKSSRRKQGADGSLSQKSSKKPAAGDLSQKSSKKSRAKDLSQKKSKKSSKVKNHSSDSSSDEESQDESVLLKHGDSRKSQDGKGYSFGLISSDSGEGSHVDVHHFNRVSMGPSEDGSSQHFEHSSSGGSDEGSVHSPR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03978 590 MobiDBLite consensus disorder prediction 1 53 - -
Vifa5g03978 590 FunFam probable serine/threonine-protein kinase RLCKVII 44 148 - -
Vifa5g03978 590 MobiDBLite consensus disorder prediction 410 432 - -
Vifa5g03978 590 MobiDBLite consensus disorder prediction 366 380 - -
Vifa5g03978 590 MobiDBLite consensus disorder prediction 350 590 - -
Vifa5g03978 590 Pfam Protein kinase domain 74 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03978 590 ProSiteProfiles Protein kinase domain profile. 72 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03978 590 SUPERFAMILY Protein kinase-like (PK-like) 58 377 IPR011009 -
Vifa5g03978 590 FunFam Serine/threonine-protein kinase PBS1 149 356 - -
Vifa5g03978 590 SMART serkin_6 72 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03978 590 MobiDBLite consensus disorder prediction 22 36 - -
Vifa5g03978 590 MobiDBLite consensus disorder prediction 461 482 - -
Vifa5g03978 590 MobiDBLite consensus disorder prediction 483 532 - -
Vifa5g03978 590 MobiDBLite consensus disorder prediction 433 451 - -
Vifa5g03978 590 CDD STKc_IRAK 78 345 - -
Vifa5g03978 590 Gene3D Phosphorylase Kinase; domain 1 34 148 - -
Vifa5g03978 590 PANTHER OS07G0668900 PROTEIN 3 352 - -
Vifa5g03978 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Vifa5g03978 590 MobiDBLite consensus disorder prediction 563 585 - -
Vifa5g03978 590 Gene3D Transferase(Phosphotransferase) domain 1 149 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03978 Vifa-Chr5 1268472187 1268474507 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03978 1 379 Glycoside Hydrolase AT3G07070 61.082 1.53e-162 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vifa5g03978 Pkinase 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03978 - - gmx:100807682 673.315