Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03954 ATGAAGAAACTCTCTTTCTCTTTCCCTTCTTCAAAATCTTCATCCAAGCCAAACAATTCTGTCAAACCCTCCCAAACCTTCGACGACGATTCCTCCACCAAACAAGATCTTCAAAAACAGTTAATCACCGAATTTGACTCTTCCAATCTCCAAACCCTAGACCCCAATTCCAAAACCCTAATTTCCCCAATCGAAAATCAATGGCGTGCTCACAAAAAAATGAAGAATCTTCATCTTCCAATTACCGATTCGCACTCTTCTCATTCCCTCACTTTTGTACCCGATACTACTTCGATCTCCGATCAGGCTGAATCCGACCAGTCATCTTACGGTCTCAACCTCCGTTCCGGCAATTCCGATAACAAAAAACAGATACCTGACGGTGATGCTCTGAGGCCCAGGGTTTCGATTGAGGTTAACATGATGCAGAAGTTTAAGGAGGATATGGAGAGGCTTCCTGATGATCAGGGGTTTGATGAGTTTAAGGATATTTCGGTAGATGGTTATGGTGCCGCGCTTTTGGGTGGGTATGGGTGGAAACAAGGAATGGGGATTGGGAAGAATGCTAAGGAGGATGTTAAGGTTGTTGAGGTTAAGAGGAGGACTGCTAAGGAGGGTTTGGGTTTTGTTGCTGATTTGCCTCCTCCTACTTCGAAGAAAGGGGAACGGAATGGGAAGGTGGAGAGGGAGAAGAGGAACAAGGAGGGGAAAGTTGTGAGGATTGTTCGAGGTAGAGATGTTGGATTGAAGGCTAGTGTTGTGAGTAGAATTGGGGATGATGTTTTTGTTTTGAAGGTTTTGGGGACTAGTGAGGAAGTTAAGGTTAGGGTAGAGGATGTTGCTGAATTGGGTTCTGTTGAAGAAGATAGGTGTTTGAGAAAGTTGAAGGATTCCAAGGTTAAAGACCACCGTGAGGAGGAAAGAAGGTCTCGTAGTAAGCATGGGAGGGATGAGGTGAAAGAGAGAAGAGTGGATGCTAATCGTGGTGGTAAGGAAGAGAAGGAGAAGAAACAGGTTCCTTGGCTTACAAGTCACATTCGGGTTAGGGTGGTTAGTCGAAGTTTTAAAGGGGGGAGACTTTATTTGAAGAAGGGTGAGGTTTTGGATGTTATCGGACCTACTACCTGTGACATATCTATGGATGAGAGTAGGGAGATTATTCAAGGGGTGTCTCAAGATATGCTTGAGACGGCTATTCCACGAAGAGGGGGGCCTGTTCTTGTTTTGCATGGGAAACATAAGGGTGCCTTTGGGAGTCTTGTTGAGAGAGATTTGGATAGGGAGATTGGTATTATTAGGGATGCTGATACCCATCAGATGCTCAATGTCAAACTCGAACATATGGCAGAATATATAGGGGACCCAAGCCTATTGGGACATTGA 1383 0.4483 MKKLSFSFPSSKSSSKPNNSVKPSQTFDDDSSTKQDLQKQLITEFDSSNLQTLDPNSKTLISPIENQWRAHKKMKNLHLPITDSHSSHSLTFVPDTTSISDQAESDQSSYGLNLRSGNSDNKKQIPDGDALRPRVSIEVNMMQKFKEDMERLPDDQGFDEFKDISVDGYGAALLGGYGWKQGMGIGKNAKEDVKVVEVKRRTAKEGLGFVADLPPPTSKKGERNGKVEREKRNKEGKVVRIVRGRDVGLKASVVSRIGDDVFVLKVLGTSEEVKVRVEDVAELGSVEEDRCLRKLKDSKVKDHREEERRSRSKHGRDEVKERRVDANRGGKEEKEKKQVPWLTSHIRVRVVSRSFKGGRLYLKKGEVLDVIGPTTCDISMDESREIIQGVSQDMLETAIPRRGGPVLVLHGKHKGAFGSLVERDLDREIGIIRDADTHQMLNVKLEHMAEYIGDPSLLGH 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03954 460 PANTHER G PATCH AND KOW-CONTAINING 1 456 IPR045166 GO:0000398
Vifa5g03954 460 MobiDBLite consensus disorder prediction 1 58 - -
Vifa5g03954 460 SMART kow_9 399 426 IPR005824 -
Vifa5g03954 460 SMART kow_9 232 259 IPR005824 -
Vifa5g03954 460 ProSiteProfiles G-patch domain profile. 166 212 IPR000467 GO:0003676
Vifa5g03954 460 MobiDBLite consensus disorder prediction 211 233 - -
Vifa5g03954 460 MobiDBLite consensus disorder prediction 99 129 - -
Vifa5g03954 460 Pfam G-patch domain 153 210 IPR026822 -
Vifa5g03954 460 Gene3D - 345 399 - -
Vifa5g03954 460 MobiDBLite consensus disorder prediction 99 123 - -
Vifa5g03954 460 MobiDBLite consensus disorder prediction 299 337 - -
Vifa5g03954 460 SMART G-patch_5 164 210 IPR000467 GO:0003676
Vifa5g03954 460 MobiDBLite consensus disorder prediction 219 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03954 Vifa-Chr5 1261787957 1261789339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03954 341 427 C2H2 Transcription Factor Family AT1G55460 32.184 3.82e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03954 K13101 - gmx:100784983 491.115