Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03953 ATGGAACCCAATGACAACCCATTAAGCTCTTTCTTCCACCACCACAACCACCAACAACAACAGCATCACCACCTTCACCAACAACAACAACAACAACAACCACAACCACAGGGAAATTCCACCACCGTAGCCTCCGCCACTACCACCACCGCGTCTCCGACCAACGGCCTCGATGGATCCCACATACTCTACCCTTCTGCTGTCTCCTCTCAGCTGGAACCAGCTAAGCGAAAACGTGGAAGACCTAGAAAATATGGAACTCCAGAACAAGCCCTAGCTGCTAAGAAAGGTTCTACGTCGTCGTTTTCACCTACTTCTGAGAATAACAACAACATTAAGAACTCCAATTCTTTCACTCCTTCTCCTTCTTTCACTTCTAGGAAATCTCATTCTCTCTCTCTAGGCAATGCAGGACAAGGTTTCAGTGTACATGTCATTGCTGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGCAATTTATGCAACAAAATAGGGGTGAAATATGCATTCTGTCTGCATCTGGTTCCATCTCTAATGCCTCTCTTCGTCAACCAGCATCTTCAGGAGGCAACATTACGTATGAGGGTCGGTTTGATATTATTTCACTTACTGGTTCCTATGTCCGTAATGAAACTGGCGGGCGAAGTGGCGGTCTCAGTGTATGCTTGTCTAATTCTGATGGACAAATCATAGGTGGTGGTATTGGTGGGCCTCTTAAAGCCGCTGGTCCAGTTCAGGTCATTGTTGGTACATTTTCTATCGACAACAAGAAGGATACTAGTGCTGGTGGAAAAGGTGACGCCTCTGCCGGTAAGTTGCCATCACCAGTTGGCGAATCAGCATCAAATTTAGGTTTCCGCCAAACAGTTGACAGTTCCAGCGGGAACCCAATGCGGGTAAATGAAGAACATCAAGCCATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCATGTGACACCTCCCAGGTCCACAGACTGGGGAAGTCATCCAGATTCAAGACATGCTGCTGGTTATGACCTATCAGGAAGAACAGGTCATGGGTCGCACCAGTCTCCTGAGAATAGAGGCTATGACCAAATTCCTGATTGA 1101 0.4696 MEPNDNPLSSFFHHHNHQQQQHHHLHQQQQQQQPQPQGNSTTVASATTTTASPTNGLDGSHILYPSAVSSQLEPAKRKRGRPRKYGTPEQALAAKKGSTSSFSPTSENNNNIKNSNSFTPSPSFTSRKSHSLSLGNAGQGFSVHVIAVAAGEDVGQKIMQFMQQNRGEICILSASGSISNASLRQPASSGGNITYEGRFDIISLTGSYVRNETGGRSGGLSVCLSNSDGQIIGGGIGGPLKAAGPVQVIVGTFSIDNKKDTSAGGKGDASAGKLPSPVGESASNLGFRQTVDSSSGNPMRVNEEHQAMGGSHFMIQQLGLHVTPPRSTDWGSHPDSRHAAGYDLSGRTGHGSHQSPENRGYDQIPD 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03953 366 MobiDBLite consensus disorder prediction 257 302 - -
Vifa5g03953 366 MobiDBLite consensus disorder prediction 1 15 - -
Vifa5g03953 366 CDD DUF296 143 253 IPR005175 -
Vifa5g03953 366 MobiDBLite consensus disorder prediction 282 301 - -
Vifa5g03953 366 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 253 - -
Vifa5g03953 366 ProSiteProfiles PPC domain profile profile. 137 278 IPR005175 -
Vifa5g03953 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 20 293 IPR039605 GO:0003680
Vifa5g03953 366 MobiDBLite consensus disorder prediction 23 67 - -
Vifa5g03953 366 MobiDBLite consensus disorder prediction 322 366 - -
Vifa5g03953 366 MobiDBLite consensus disorder prediction 1 132 - -
Vifa5g03953 366 Pfam Plants and Prokaryotes Conserved (PCC) domain 143 254 IPR005175 -
Vifa5g03953 366 Gene3D - 142 266 - -
Vifa5g03953 366 MobiDBLite consensus disorder prediction 93 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03953 Vifa-Chr5 1261248018 1261251903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03953 41 366 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 50.681 2.92e-84 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03953 - - gmx:100809675 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03953 5 1261248018 1261251903 Vifa5g03953 5 1261248018 1261251903 ECH