Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03952 ATGCTCTATTGCAAGAAGCCCAACCCACAGAAATACAAAACCCTAAACCCTAACTTCTGGTCTATTTATGTCCTACCGCCCCGCCCACATTTCACACAGCCTTCTTCCTCACCATCATCCCCACTCTTAGGTAAGGTTGAAGTTGAAGCCACAATGTCGAAGAATCCGAAGGTTTTCTTTGATATTCTAATTGGAAAAAATAAAGCTGGGAGGGTAGTAATGGAGCTTTTTGCTGATGCTGTCCCCAAAACAGCTGAGAATTTCAGAGCACTATGCACTGGTGAAAAGGGGATTGGACAATTAGGGAAGCCTTTACATTTCAAAGGGTCTGGTTTTCATAGGATAATTCCAGATTTCATGTGTCAGGGAGGTGATTTTACGAGAGGGAATGGGACTGGAGGAGAGTCAATTTATGGGTCTAAGTTTGCAGATGAGAATTTCAGTTTGAAGCATACTGGACCTGGGATTCTTTCCATGGCGAATTCTGGACCTAATACTAATGGTTCACAGTTTTTTATTTGTACCAGTAAGACTCAGTGGCTTGATGGAAAACATGTTGTGTTTGGTAAAGTTGTTGATGGGTATAGTGTGGTTCAGGAGATGGAGAAGGTGGGTTCACAAAATGGTAGGACTTCAGAGCCTGTAGTAATTGATGATTGTGGAGAAGTCAACAACTGA 678 0.4233 MLYCKKPNPQKYKTLNPNFWSIYVLPPRPHFTQPSSSPSSPLLGKVEVEATMSKNPKVFFDILIGKNKAGRVVMELFADAVPKTAENFRALCTGEKGIGQLGKPLHFKGSGFHRIIPDFMCQGGDFTRGNGTGGESIYGSKFADENFSLKHTGPGILSMANSGPNTNGSQFFICTSKTQWLDGKHVVFGKVVDGYSVVQEMEKVGSQNGRTSEPVVIDDCGEVNN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03952 225 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 57 223 - -
Vifa5g03952 225 CDD cyclophilin_ABH_like 56 221 - -
Vifa5g03952 225 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 66 221 IPR002130 GO:0000413|GO:0003755
Vifa5g03952 225 Gene3D - 44 225 IPR029000 -
Vifa5g03952 225 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 59 222 IPR002130 GO:0000413|GO:0003755
Vifa5g03952 225 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 183 198 IPR002130 GO:0000413|GO:0003755
Vifa5g03952 225 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 155 170 IPR002130 GO:0000413|GO:0003755
Vifa5g03952 225 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 170 182 IPR002130 GO:0000413|GO:0003755
Vifa5g03952 225 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 76 91 IPR002130 GO:0000413|GO:0003755
Vifa5g03952 225 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 112 124 IPR002130 GO:0000413|GO:0003755
Vifa5g03952 225 FunFam Peptidyl-prolyl cis-trans isomerase 52 224 - -
Vifa5g03952 225 SUPERFAMILY Cyclophilin-like 50 223 IPR029000 -
Vifa5g03952 225 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 107 124 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03952 Vifa-Chr5 1260377497 1260378805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03952 70 204 U-box Gene Family AT5G67530 48.529 2.74e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03952 K01802 - gmx:100306275 316.62