Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03940 ATGGTTGATCAAATTGAGTCATGTTCGCCTAATACGTTGGTACAATGTCGAATATGTCACGATGAAGATGAAGACTTAAACATGGATACACCTTGTTCTTGTTCTGGTACATTGCAGTATGCTCATAGAATATGTGTGCAAAGATGGTGCAATGAGAAAGGCTACACTGCTCCTCAAGTTCCTTTGTTTCACTATAGGGGCAACTGGGAAATTCCAAGAGTTGGTTTCAATAATCATCAGTTCATAGCATTGTTTCCTGCTAATCATGAATTTCTAGACTTTAATTTTGAATATTCAGCTCCCTCTACAAGGAGCCGCGTGTTCATTCGCATTGTTGCCATCATTTCAGGAAACAACATCAGTGAGAAGGCTTATGAGGATGGAAGAACAATGGTGGGGAGTAAGACAGCAGACCTGAGATCTCAAATCAGGCGAAAAGGTGACACAAACCAAGCTTCAAGTATAAGGAATCCATGGCAGCAATCAGATCAGACACAGTCTCATTCTAATCATGAAACACAACTTAAGCCATCCCGAGACGTGGCATTGGCAACAGCAGCAAAATTTATAATGCTGAATATATTTGTTGCAGGAACAGACACAAGCATGTACACACTAGAATGGGCAATGGCAGAGTTAATGCACAATCCAGAAATCATGTCAAAAGTACAAAATGAACTCGAACAAGTTGTTGGCAAAGGTATTCCAGTCGAAGAAACAGACATAGCCAAATTACCATACATGCAAGCAGTTATAAAAGAGACGTTTCGTGTACATCCACCAGTTCCGTTATTACTACCTCGCAAAGCAGAAACAGATGTTGAAATTGGTGACTACATTATTCCAAAAGATGCACAAGTTTTGGTTAATGCTTGGGTTATTGGCAGAGATCCAAGTAAATGGGAGAATCCTAATGCTTTTGTGCCGGAGAGATTTTTCAATAGTGAGATTGATTTTAAAGGACATCATTTTGAGCTTATTCCATTTGGGTCTGGTAGAAGAATTTGTCCTGGTTTGCCTTTGGCTATTAGAATGTTGCCTTTGATGTTGGGATCTTTGGTTAATTGCTTTGATTGGAGACTTGAAGATGGATTGAATGTCGATGATTTGAATAAGGAAGATGAGTATGGGATTACCTTGGAAAAATCTCAACCTGTGAGAATTGTTCCAATCAAATTGACTAAGCAATAA 1191 0.3913 MVDQIESCSPNTLVQCRICHDEDEDLNMDTPCSCSGTLQYAHRICVQRWCNEKGYTAPQVPLFHYRGNWEIPRVGFNNHQFIALFPANHEFLDFNFEYSAPSTRSRVFIRIVAIISGNNISEKAYEDGRTMVGSKTADLRSQIRRKGDTNQASSIRNPWQQSDQTQSHSNHETQLKPSRDVALATAAKFIMLNIFVAGTDTSMYTLEWAMAELMHNPEIMSKVQNELEQVVGKGIPVEETDIAKLPYMQAVIKETFRVHPPVPLLLPRKAETDVEIGDYIIPKDAQVLVNAWVIGRDPSKWENPNAFVPERFFNSEIDFKGHHFELIPFGSGRRICPGLPLAIRMLPLMLGSLVNCFDWRLEDGLNVDDLNKEDEYGITLEKSQPVRIVPIKLTKQ 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03940 396 Pfam Cytochrome P450 191 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03940 396 MobiDBLite consensus disorder prediction 146 172 - -
Vifa5g03940 396 ProSiteProfiles Zinc finger RING-CH-type profile. 8 68 IPR011016 GO:0008270
Vifa5g03940 396 SMART ringv_2 15 56 IPR011016 GO:0008270
Vifa5g03940 396 CDD RING_CH-C4HC3_MARCH 16 58 - -
Vifa5g03940 396 Gene3D Cytochrome P450 101 395 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03940 396 PRINTS P450 superfamily signature 197 214 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03940 396 PRINTS P450 superfamily signature 250 261 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03940 396 PRINTS P450 superfamily signature 327 336 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03940 396 PRINTS P450 superfamily signature 336 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03940 396 SUPERFAMILY Cytochrome P450 187 389 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03940 396 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 186 392 - -
Vifa5g03940 396 SUPERFAMILY RING/U-box 13 56 - -
Vifa5g03940 396 MobiDBLite consensus disorder prediction 136 177 - -
Vifa5g03940 396 Pfam RING-variant domain 16 53 IPR011016 GO:0008270
Vifa5g03940 396 Pfam Protein of unknown function (DUF3675) 54 115 IPR022143 -
Vifa5g03940 396 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 329 338 IPR017972 GO:0005506|GO:0016705
Vifa5g03940 396 PRINTS E-class P450 group I signature 326 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03940 396 PRINTS E-class P450 group I signature 290 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03940 396 PRINTS E-class P450 group I signature 249 267 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03940 396 PRINTS E-class P450 group I signature 206 232 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03940 396 PRINTS E-class P450 group I signature 186 203 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03940 396 PRINTS E-class P450 group I signature 336 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03940 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 71 IPR013083 -
Vifa5g03940 396 FunFam Geraniol 8-hydroxylase 143 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03940 Vifa-Chr5 1256799384 1256801367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03940 190 392 Cytochrome P450 AT2G45550 56.650 1.03e-84 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03940 - - cave:132173603 300.056