Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03939 ATGCATTCTTCATCTTCACCTGTTTTTCCCACTCTTATGGAAAGCGCGTACATGAAACCCTCGGATTCTTTTCATCGTTCGCTTGTTGGTGGTTTGACTGCAAATCCTGCATTGCTGCAAGCTACACCATCAAATCCGATCAGAAGTGATAGACAGGCGTTTTCGGCTTCGCCCGCTGCTGAATGTCCTGACGGCGTCCCCTTTTCTTCTGATACACAGCATGATAAGCAATATCAAGATTCTCCCTTCACTTCTCAGACGTTAGGTGACGATGTGTCTTCGGAAATCCACTCAACAACATTCACTTCTCATCCTCAAGAAAATGATGATATTTCATGGGGACCAGATCCGATGCAGGATATTGTTTGTTTTCCTGAAATTTTTTCTGTCCAGCATGATCAGGTGGAAAACAGTGCTTCTTACATGAACGATGGCAATGTCAAAAAATCTGATTTCGGGGAGTGGGTTGACCAGCTAATGACAATTGATGATACTCCTCATCCAAATTGGAGTCAGCTTCTTGGTGATGACAATGTTGCTGAACCAACGCCGAAGGCAACACAGGTTTCTCTGAAGCAGCATATACCGGCTATAGAAGTTAATGATCTTTGTAATTCAGCTTCAGCATCGACTGCACCTCAAACTAAGCCTAGAATGCGATGGAGTCCAGAACTTCACGAGGCTTTTGTGGAAGCAGTCAGCCAGCTTGGTGGTAGTGACAAGGCCACTCCAAAAGGTGTCTTGAATCTGATGAACGTTGACGGCCTTACTATCTACCATGTAAAAAGCCACCTGCAGAAGTATAGAACTGCCCGATACAAACCTGAGTCGCCAGAAGAAACTTCTGAGAAAAAGATGAGTACAATCGAAGAAATGAAATCTCTAGACTTGAAAACGAGTAAGGGCATCACCGAAGCATTGCGGTTGCAGATGGACCTCCAGAAACGGCTTCACGAACAGCTTGAGATTCAAAGAAAGTTGCAGATTCAAATTGAAAACCAAGGGAAACATCTTCAGATGATGTTTGAGAAACAGAAACAGATAGGTGGCAGCAAGGGCTCGTCCCCTTCTAACGCGCCTTCTGCTGCACTCTTGGACACTGGGGTAACCTCTCCTGTAGACAAATTGAAAACGTCTGGAAAATTAAAATGCAACACCAAAGAAAGTTCTGAGGATGCAACACATGAAGCCGAAGTTACCGATGAACATGAGAATACAGATGATCAGTTTTCTGCCGTACCCCCAACAAAACGGGCGAAGATTCAATGA 1269 0.4444 MHSSSSPVFPTLMESAYMKPSDSFHRSLVGGLTANPALLQATPSNPIRSDRQAFSASPAAECPDGVPFSSDTQHDKQYQDSPFTSQTLGDDVSSEIHSTTFTSHPQENDDISWGPDPMQDIVCFPEIFSVQHDQVENSASYMNDGNVKKSDFGEWVDQLMTIDDTPHPNWSQLLGDDNVAEPTPKATQVSLKQHIPAIEVNDLCNSASASTAPQTKPRMRWSPELHEAFVEAVSQLGGSDKATPKGVLNLMNVDGLTIYHVKSHLQKYRTARYKPESPEETSEKKMSTIEEMKSLDLKTSKGITEALRLQMDLQKRLHEQLEIQRKLQIQIENQGKHLQMMFEKQKQIGGSKGSSPSNAPSAALLDTGVTSPVDKLKTSGKLKCNTKESSEDATHEAEVTDEHENTDDQFSAVPPTKRAKIQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03939 422 MobiDBLite consensus disorder prediction 348 365 - -
Vifa5g03939 422 MobiDBLite consensus disorder prediction 40 90 - -
Vifa5g03939 422 Pfam MYB-CC type transfactor, LHEQLE motif 303 347 IPR025756 -
Vifa5g03939 422 Gene3D - 215 274 - -
Vifa5g03939 422 SUPERFAMILY Homeodomain-like 214 270 IPR009057 -
Vifa5g03939 422 Pfam Myb-like DNA-binding domain 218 269 IPR001005 -
Vifa5g03939 422 FunFam Myb family transcription factor 215 273 - -
Vifa5g03939 422 MobiDBLite consensus disorder prediction 380 408 - -
Vifa5g03939 422 MobiDBLite consensus disorder prediction 346 422 - -
Vifa5g03939 422 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 208 395 IPR044848 GO:0003700
Vifa5g03939 422 NCBIfam myb-like DNA-binding domain, SHAQKYF class 216 270 IPR006447 GO:0003677
Vifa5g03939 422 MobiDBLite consensus disorder prediction 70 90 - -
Vifa5g03939 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 273 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03939 Vifa-Chr5 1256404852 1256406889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03939 95 359 G2-like Transcription Factor Family AT3G04450 50.709 7.23e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa5g03939 Myb_DNA-binding 1.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03939 - - mtr:25499705 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03939 5 1256404852 1256406889 Vifa5g03939 5 1256404852 1256406889 ECH