Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03931 ATGGGAACTCCTGTGAATATTATTGCGGGTTCTCATGTCTGGGTGGAAGATCCAGAGGGATTGTTGCAAAGTTATCAAAAATATTACCCAAAGACATGGAAGCTCCGCCTGGGGGAATATGAATTAAATGAAATATATACTTATACTGGAAACATACTGATTGCAATAAATCCATTTCAAAAACTACCGCATCTGTATGATGCACACATGATGCAACAATACAAGGGAGCGCCATTTGGAGAGTTAAGCCCTCATGTATTTGCGATTGCTGATGTTGCATATAGAGCAATGATTAATGAAAAGAAAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACGAAAATGCTTATGCAATATCTTGCTTTCTTAGGTGGTAGGGCAGCCACTGAAGGACGAACAGTCGAACAACAAGTTCTTGAATCAAATCCAGTTTTGGAAGCATTTGGTAATGCCAAAACTGTCAGGAATAACAATTCCAGGCAAGTCTTCCTTACATTCGCTTTGGTAATTAATGATCCGGAACGCAACTACCACTGCTTTTATCTTCTTTGTGCTGCACCACAGGAGGAAATTGAGAAATACAAATTAGGACATCCTAAAACATTTCATTACCTTAACCAGTCGAAGTGCTTTGAACTGGCTGATATAAGTGATTCTCGTGAGTATCTTGCCACCAGGAGAGCTATGGATATTGTTGGAATAAGTCAAAAAGAGCAGGAAGCAATTTTCCGAGTTGTTGCTGCAATTCTTCATATTGGTAATATTGAGTTTGCCAAAGGAAAGGAAGTTGATTCATCGGTTCCAAAAGATGATAAAGCCAATTTTCACTTAAAAACAACTGCTGAGCTCCTCATGTGTGATGTAAATGGCTTGGAAGATGCATTATGTAAGCGTGTCATGGTTACCCCTGAGGAAATTATAAAACGGAGCCTTGATCCCCAAAGTGCAGCAGTCAGCAGAGATGGCTTCGCAAAAACAATTTATTCTAGGCTTTTTGATTGGTTGGTGGACAAGATTAACAATTCAATTGGACAAGATGCCACTTCTAAATCTTTGATCGGAGTCCTTGATATTTATGGTTTCGAAAGCTTTAAATCTAACAGTTTTGAGCAGTTCTGCATTAATTTTACAAATGAGAAGTTGCAGCAGCATTTCAATCAGCACGTGTTTAAAATGGAACAAGAAGAATATACGAAGGAACAGATCGATTGGAGCTACATTGAATTTGTTGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACCTGGAGGAATTGTTGCTCTCCTAGATGAAGCTTGCATGTTTCCAAAGTCAACACATGAAACATTTTCAAACAAGCTTTATCAAACATTTAAGAGTCACAAGCGCTTTATTAAACCAAAACTGTCTCGAACAGATTTCACTATTGCACATTATGCAGGCGAGGTGCAGTACCAGTCTGACCAATTTTTAGATAAAAACAAGGATTATGTGGTTCCTGAACATCAAGATTTGTTGGGTTCTTCCAAATGTCCTTTTGTAGCGGGCCTTTTTCCTCAACTTCCAGATGAGACATCAAAATCTTCTAAGTTCTCTTCTATTGGTTCTCGTTTTAAGCTGCAACTACAGCAACTAATGGAGACATTAAACTCAACGGAGCCTCATTATGTTAGATGTGTGAAACCAAACAACCTCCTCAAGCCAGCTGTTTTTGAGAATGTCAATATTATGCAACAACTTCGCTGTGGTGGTGTTTTAGAGGCGATCAGGATTAGTTGTGCTGGGTACCCAACCCGTCGTGCTTTCTTTGAGTTTATAAATCGATTTTCCATCCTTGCTCCAGAGGTCACAGAAGCACACAACGATGAGAAGGCTGTTTGCCATAAGATTCTAGAAAAGATGGGGCTTAAAGGATATCAGATTGGAAAAACAAAGGTATTTCTAAGAGCAGGTCAGATGGCTGAGCTAGATGCTCGCAGAGCTCAAGTTCTAAGTATAGCAGCAAAAACTATCCAACGGCGTGTACGAACCTATCAGGCTCGTAGACATTATCTTGCATTACGAAGGAAAACCATATACGTGCAGTCTCTGTGGAGAGGAAGACTTGCATGCAAACTTTATCGGAACATGAGAAGGGAGGATGCAGCTATTAAAATTCAGAAGCACGCACGCAGACATGGATCAAGGAAAGCCTACAGTAAACTCCATGCATCAGTGCTTACATTGCAAACGGCTTTGAGGGCAATCGCTGCCCGTAAGGAGTTCACTTATAAGAAAAAGACTAAAGCTTCCACCATTATTCAGGCTCGCTGGCGGTGCCACAGGGCTTCCTCATATTTTAAGAGGCTGAAGAAAGGTGCAATTGTGACACAATGCCGGTGGAGGGGGCGTATAGCCAGAAAAGAGCTTAGGAGCCTGAAAATGGCTTCAAGAGAAACTGGTGCTCTTAAAGAAGCAAAGGATAAGCTTGAAAAACGAGTGGAGGAACTCACATGGCGCCTCCAACTAGAAAAAAGTTTAAGGACCAATCTAGAAGAATCCAAAGCACAAGAGATAGCAAAACTGCAGAATTCTCTGCAAGAGCTGCAGAGCAAATCTGATGAAACCAATGCTATCCTTGTAAAGGAGCGCGAGAATGCAAAGAAATCTATTGAAGAAGCACCTCCTGTTATTCAAGAGACACAAGTAATTGTTGAAGACACACAGAAGGTTGAATCACTAACAGCAGAAGTTGAGAGTTTAAAGACCTCACTAGAGGCAGAGAAACAGAAAGGTGGTGATTTTGAAAGGAAATATAATGAAGCCCAAGCTTTAAGTGAAGAAAGGGGTCAAAAATTAGAAGATACGGAAAAGAAGGCTCGTCAGCTCCAAGAATCACTAACCAGGCTAGAAGAGAAGATTAGTAATTTAGAATCAGAGAACCAAGTTCTACGTCAACAAGCTGTTTCCATGGCACCTAATAAGTTCCTCTCAGGACGCTCCAGATCAATTATTCAGAGAGTTGACAGTGGACATATTGGAGCGGAAGCAAAGCCGCCACATTTGGATATGCATAGCTCATCAATGAACCAAAGGGAATCCGCTGAGGTGGAGGATAAACCACAGAAGTCACTGAATGAAAAACAACAAGAGAATCAAGAGTTGCTCATTAGATGTATTGCACAACATCTAGGCTTTGCTGGGAATAGACCAATTGCTGCCTGTATCATATACAAGTGCCTCTTGCATTGGAGATCATTTGAAGTTGAGCGTACCAGCGTGTTTGATCGTATAATTCAAACTATAGGCCATGCAATTGAGACCCAGGAAAACAACAATGTCTTGGCTTATTGGTTATCCAATGCTTCTACACTTCTCTTGTTGCTCCAGCGCACACTTAAGGCGAGTGGTGCTGCTGGAATGGCCCCTCAGCGCCGCCGTTCTTCTTCAGCAACCCTGTTTGGGAGGATGACTCAAAGTTTCCGTGGAGCTCCAGCAGGAGTCAATCTTTCCATGATCAATGGTAGCAACAGTGGAGGAGTAGATACATTAAGACAGGTTGAGGCCAAGTACCCAGCTCTGCTTTTCAAACAGCAGCTGACAGCTTATGTGGAAAAGATCTATGGAATGATTCGTGATAACTTGAAGAAAGAAATTTCTCCCTTGCTTGGATTGTGCATCCAGGCACCAAGAACATCCAGAGCGAGCTTGGTTAAGGGATCATCACGTTCAGTTGCAAACACTGAAGCGCAAAAAGCCTTGATTGCTCACTGGCAGGGGATAGTCAAGAGCCTTGGGAACTTCTTAAATACTTTGAAAGAGAATAACGTCCCCCCATTTTTGGTTCGCAAGGTGTTCACTCAAATTTTTTCTTTCATCAATGTCCAACTCTTTAATAGTCTTCTCTTAAGACGGGAGTGTTGCTCATTTAGTAATGGAGAATATGTGAAAGCTGGTTTGGCTGAATTGGAGCATTGGTGTTATAAGGCAACAGATGAGTATGCAGGTCCAGCCTGGGATGAGCTCAAACATATTAGGCAAGCTATTGGATTTCTGGTCATACATCAAAAACCAAAGAAAACGTTGGATGAAATAAGTCATGACCTGTGTCCAGTCCTCAGTATACAGCAGCTATATCGAATTAGTACCATGTACTGGGATGACAAGTACGGCACACATAGTGTATCCCCTGATGTAATATCGAATATGCGAGTGTTGATGACTGAAGATTCAAATAATGCAGTTAGTAATTCTTTCCTGTTGGATGATGATTCAAGTATTCCGTTTTCTGTTGATGACATATCAAAGTCAAAGGAACAGATAGATATATCTGATATAGAGCCCCCACCATTAATTCGTGAGAACTCTGGCTTTAGTTTCTTGTTGCCACGCCCAGACTGA 4383 0.413 MGTPVNIIAGSHVWVEDPEGLLQSYQKYYPKTWKLRLGEYELNEIYTYTGNILIAINPFQKLPHLYDAHMMQQYKGAPFGELSPHVFAIADVAYRAMINEKKSNSILVSGESGAGKTETTKMLMQYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSRQVFLTFALVINDPERNYHCFYLLCAAPQEEIEKYKLGHPKTFHYLNQSKCFELADISDSREYLATRRAMDIVGISQKEQEAIFRVVAAILHIGNIEFAKGKEVDSSVPKDDKANFHLKTTAELLMCDVNGLEDALCKRVMVTPEEIIKRSLDPQSAAVSRDGFAKTIYSRLFDWLVDKINNSIGQDATSKSLIGVLDIYGFESFKSNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQIDWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFSNKLYQTFKSHKRFIKPKLSRTDFTIAHYAGEVQYQSDQFLDKNKDYVVPEHQDLLGSSKCPFVAGLFPQLPDETSKSSKFSSIGSRFKLQLQQLMETLNSTEPHYVRCVKPNNLLKPAVFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFSILAPEVTEAHNDEKAVCHKILEKMGLKGYQIGKTKVFLRAGQMAELDARRAQVLSIAAKTIQRRVRTYQARRHYLALRRKTIYVQSLWRGRLACKLYRNMRREDAAIKIQKHARRHGSRKAYSKLHASVLTLQTALRAIAARKEFTYKKKTKASTIIQARWRCHRASSYFKRLKKGAIVTQCRWRGRIARKELRSLKMASRETGALKEAKDKLEKRVEELTWRLQLEKSLRTNLEESKAQEIAKLQNSLQELQSKSDETNAILVKERENAKKSIEEAPPVIQETQVIVEDTQKVESLTAEVESLKTSLEAEKQKGGDFERKYNEAQALSEERGQKLEDTEKKARQLQESLTRLEEKISNLESENQVLRQQAVSMAPNKFLSGRSRSIIQRVDSGHIGAEAKPPHLDMHSSSMNQRESAEVEDKPQKSLNEKQQENQELLIRCIAQHLGFAGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIETQENNNVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGAPAGVNLSMINGSNSGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANTEAQKALIAHWQGIVKSLGNFLNTLKENNVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGPAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDISKSKEQIDISDIEPPPLIRENSGFSFLLPRPD 1460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03931 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 714 813 IPR027417 -
Vifa5g03931 1460 PRINTS Myosin heavy chain signature 46 65 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g03931 1460 PRINTS Myosin heavy chain signature 103 128 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g03931 1460 PRINTS Myosin heavy chain signature 412 440 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g03931 1460 PRINTS Myosin heavy chain signature 150 177 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g03931 1460 PRINTS Myosin heavy chain signature 359 387 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g03931 1460 SMART iq_5 712 734 IPR000048 GO:0005515
Vifa5g03931 1460 SMART iq_5 664 686 IPR000048 GO:0005515
Vifa5g03931 1460 SMART iq_5 783 805 IPR000048 GO:0005515
Vifa5g03931 1460 SMART iq_5 760 782 IPR000048 GO:0005515
Vifa5g03931 1460 SMART iq_5 687 709 IPR000048 GO:0005515
Vifa5g03931 1460 SMART iq_5 735 757 IPR000048 GO:0005515
Vifa5g03931 1460 ProSiteProfiles IQ motif profile. 665 692 IPR000048 GO:0005515
Vifa5g03931 1460 Coils Coil 807 841 - -
Vifa5g03931 1460 Pfam DIL domain 1279 1382 IPR002710 -
Vifa5g03931 1460 Gene3D - 665 715 - -
Vifa5g03931 1460 Gene3D - 716 762 - -
Vifa5g03931 1460 Gene3D - 763 812 - -
Vifa5g03931 1460 Coils Coil 846 880 - -
Vifa5g03931 1460 Gene3D - 369 553 - -
Vifa5g03931 1460 FunFam Class V myosin 369 505 - -
Vifa5g03931 1460 Gene3D Kinesin motor domain 179 592 IPR036961 -
Vifa5g03931 1460 SMART DIL_2 1278 1385 IPR002710 -
Vifa5g03931 1460 Pfam Myosin head (motor domain) 179 650 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g03931 1460 Pfam Myosin head (motor domain) 40 167 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g03931 1460 SMART MYSc_2a 27 663 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g03931 1460 Gene3D Myosin VI head, motor domain, U50 subdomain 242 531 - -
Vifa5g03931 1460 Coils Coil 905 925 - -
Vifa5g03931 1460 Pfam IQ calmodulin-binding motif 668 685 IPR000048 GO:0005515
Vifa5g03931 1460 Pfam IQ calmodulin-binding motif 762 782 IPR000048 GO:0005515
Vifa5g03931 1460 Pfam IQ calmodulin-binding motif 715 733 IPR000048 GO:0005515
Vifa5g03931 1460 Pfam IQ calmodulin-binding motif 786 805 IPR000048 GO:0005515
Vifa5g03931 1460 ProSiteProfiles IQ motif profile. 688 717 IPR000048 GO:0005515
Vifa5g03931 1460 Coils Coil 940 981 - -
Vifa5g03931 1460 ProSiteProfiles IQ motif profile. 784 813 IPR000048 GO:0005515
Vifa5g03931 1460 ProSiteProfiles IQ motif profile. 761 787 IPR000048 GO:0005515
Vifa5g03931 1460 PANTHER MYOSIN 40 1391 - -
Vifa5g03931 1460 ProSiteProfiles Dilute domain profile. 1090 1403 IPR002710 -
Vifa5g03931 1460 ProSiteProfiles IQ motif profile. 736 765 IPR000048 GO:0005515
Vifa5g03931 1460 CDD MYSc_Myo11 40 650 IPR036018 -
Vifa5g03931 1460 ProSiteProfiles IQ motif profile. 713 742 IPR000048 GO:0005515
Vifa5g03931 1460 Gene3D Kinesin motor domain 35 176 IPR036961 -
Vifa5g03931 1460 Gene3D - 182 240 - -
Vifa5g03931 1460 MobiDBLite consensus disorder prediction 1026 1041 - -
Vifa5g03931 1460 FunFam Myosin 2 242 361 - -
Vifa5g03931 1460 FunFam unconventional myosin-Va 763 811 - -
Vifa5g03931 1460 Gene3D - 597 663 - -
Vifa5g03931 1460 ProSiteProfiles Myosin motor domain profile. 40 662 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g03931 1460 FunFam unconventional myosin-Va 667 715 - -
Vifa5g03931 1460 MobiDBLite consensus disorder prediction 1008 1042 - -
Vifa5g03931 1460 FunFam Myosin heavy chain 182 237 - -
Vifa5g03931 1460 CDD MyosinXI_CBD 1041 1426 IPR037975 GO:0007015
Vifa5g03931 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 713 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03931 Vifa-Chr5 1255956473 1255967840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03931 1 1460 Myosins gene family AT1G54560 78.837 0.0 2496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03931 K10357 - gmx:100816792 2516.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03931 5 1255956473 1255967840 Vifa5g03931 5 1255956473 1255967840 ECH
Vifa5g03931 5 1255956473 1255967840 Vifa3g01227 3 319287843 319315998 PCT