Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03913 ATGGTTGTGAAAGTGAAAAGAGAAACTCTTGAAGCATGCATGACATGCCCTATTTGTCTTCACCTCTTGAAAGATGCCACTACCATTTCTCTTTGTCTTCACACTTTTTGCAGGAAGTGTATATATGACAAGCTTTCTGATGAAGAGGTGGATTGTTGTCCAGTATGCAACATTGATCTTGGCATTCTTCCCGTCGAAAAGCTCAGGCCTGATCACAATCTGCAAGATATTAGGACCAAAATATTTCCACTTAAACGAAAAAAGGTTCAAGTCGAAGAAGTTGTTCCTTCAATACCCCTACCAGCAAAAAGGAAAGAAAGATCTCTTTCATCATTGGTGGTGAGTGCTCCCAAAGTTTCAACACATACAGGCTTTACTGGAAAGAGAACAAAAACTGGTACAAGAAAGAATGCTGCTTTACGTGGATGCAGTTTTATCCCCGAAGGTTCTGTAAAGAATGAAGAAAAACCCGACGAAGATATTCTGGGTTCTTTCATAGCGGAGACTTCTAAGAAGCATAGACCCAATGAAGATGCAAACAGCAACATAGACCTTACCAAAGGAAAGACTGATCTCTGGACGCCGTTGAACTGTCTTGTTGAAGCGGCCAATAGAACAAAGTCCTCGAGGTCAAATTTACAAGGGACCCCTCTTGCCAAATTAGAGTCCCCAGTTACTCCTCACGATGGATTATTGATGTCTGAAATTACCAAATCAGAGCCACCTACATCTGTTCAGAGTGAATTACACATGCCTAAAACCAAGAACAAGAGTAATGGACATAAAACAAAGTTTGGAGACGACAAGGACGGAAACACCTTCCCTTCGGGACCAGTGAAGCGAAAAAGGATGCGTCCTCCTAATCAGAAGAGAACAGCAGCATCTGAGATGTCTGCCTCAGCACAACTTGTGTTAGATGCAACAGGGAGCAGGTGCAACAGGATAAACAGTCCTATTTGGTTTACATTAGTTGCTTCAGAAGACCAGAATGGAGAAATTTCCTTGCCACAGATCTCGGCTTGCTATTTAAGAATAAAGGATGGTACCGTGCCCGTCTCGTTTATTCAAAAGTATCTCATGAAGAAACTTAATCTTGCTAGCGAAGCTGAGGTGGAAATAATATGCCGGGGTCAGCCCGTGCTCCCATCTTTGCAAATGCATAACTTAGTAGATCTGTGGTTCTGCACAGCATCAACATCGAAAAAGCTACCGGCATCTGTAGGATCTTCGGCTAAGGACTTTGTGATGGCTTTATCGTATTGTCGAAAGACCATACCTCTTTGA 1284 0.4252 MVVKVKRETLEACMTCPICLHLLKDATTISLCLHTFCRKCIYDKLSDEEVDCCPVCNIDLGILPVEKLRPDHNLQDIRTKIFPLKRKKVQVEEVVPSIPLPAKRKERSLSSLVVSAPKVSTHTGFTGKRTKTGTRKNAALRGCSFIPEGSVKNEEKPDEDILGSFIAETSKKHRPNEDANSNIDLTKGKTDLWTPLNCLVEAANRTKSSRSNLQGTPLAKLESPVTPHDGLLMSEITKSEPPTSVQSELHMPKTKNKSNGHKTKFGDDKDGNTFPSGPVKRKRMRPPNQKRTAASEMSASAQLVLDATGSRCNRINSPIWFTLVASEDQNGEISLPQISACYLRIKDGTVPVSFIQKYLMKKLNLASEAEVEIICRGQPVLPSLQMHNLVDLWFCTASTSKKLPASVGSSAKDFVMALSYCRKTIPL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03913 427 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 423 IPR044807 GO:0004842
Vifa5g03913 427 Pfam Zinc finger, C3HC4 type (RING finger) 16 56 - -
Vifa5g03913 427 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Vifa5g03913 427 ProSiteProfiles Zinc finger RING-type profile. 16 57 IPR001841 -
Vifa5g03913 427 Gene3D - 297 404 - -
Vifa5g03913 427 SMART ring_2 16 56 IPR001841 -
Vifa5g03913 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 107 IPR013083 -
Vifa5g03913 427 MobiDBLite consensus disorder prediction 237 253 - -
Vifa5g03913 427 MobiDBLite consensus disorder prediction 206 297 - -
Vifa5g03913 427 SUPERFAMILY RING/U-box 9 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03913 Vifa-Chr5 1253473219 1253477497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03913 1 346 C3H Transcription Factor Family AT2G30580 44.904 8.52e-83 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03913 K16277 - gmx:100783999 635.565