Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03909 ATGGAAAGAGTGTTTTCAATTGCAGAAATTACTGAACAATATTGGTTAACATCTAAGGCTTGTAAAGAAGGAGAATCAAAGATGAATAGAAGTGATTCTGAATGGGCTTTTCAACAGTTTCTTCAACAACAACATGAAGAAGAAGCTGCTAATACTTCTCATGCAAAGCCTTGTTCTTCTTCTTCAACTTCAACTTCTTCTTCCAACGTTGATCTCAAACTCAATAATAATAATATCAATAATTCAGAAGATTACTATGCTATCCTCAAAACCAAGCTTGATCTTGCCTGCGCCGCAGTCGCCATGTCTAGGGGATCTTTGGTGAAATCTCAGGAACCTGACAATGGATCACATGCACCTTATGCTTCTGAACATGGACCTATTCCTGCTTTAAAAGGTTTGGAGAATAAAGATGTCATGAAAGTTGTGCAGAAGAAGCCTGTTGTTTCAATCAGGTCAACAACAAGTTCTTCATCAGATGATGAAGAAGCTGAGGGAGAGATTAATATGAACGGAGACATGAATCCTTCAGATGCTAAAAGAGTAAGAAGGATGCTCTCTAATAGGGAGTCTGCTAGACGTTCGAGACGAAGAAAACAAGCTCATTTATCCGAGCTTGAAACACAGGTCTCTCAATTAAGAGATGAAAAATCTTCATTGTTAAAGAATTTAACAGATGTGACTCAAAAATACAATAATTCTGCTGTTGACAACAGAATATTAAAAGCTGATGTTGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACGGTTAAAAGATTTACCGGATTGACTCCAATGATGTTTAATGAAATATCGGAAATATCATCAATGGGAATGGGAATGTCATTATTTGATGGAAGCCCTTCTGAGTCATCAGCTGATGCATCTGTGCCAGAAGCTGAAAGTATGCAGAAAAACACTGCAGCAGGGAACAAGATAGGAAGAACAAACTCCTTGCCGCGAGTGGCTAGCTTGGAACATCTGCAGAATCGGATTCGCGGTGGCGCTGATGAAGAGAAGTGA 1029 0.3897 MERVFSIAEITEQYWLTSKACKEGESKMNRSDSEWAFQQFLQQQHEEEAANTSHAKPCSSSSTSTSSSNVDLKLNNNNINNSEDYYAILKTKLDLACAAVAMSRGSLVKSQEPDNGSHAPYASEHGPIPALKGLENKDVMKVVQKKPVVSIRSTTSSSSDDEEAEGEINMNGDMNPSDAKRVRRMLSNRESARRSRRRKQAHLSELETQVSQLRDEKSSLLKNLTDVTQKYNNSAVDNRILKADVETLRAKVKMAEETVKRFTGLTPMMFNEISEISSMGMGMSLFDGSPSESSADASVPEAESMQKNTAAGNKIGRTNSLPRVASLEHLQNRIRGGADEEK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03909 342 Gene3D - 179 234 - -
Vifa5g03909 342 SUPERFAMILY Leucine zipper domain 180 231 IPR046347 GO:0003700|GO:0006355
Vifa5g03909 342 Coils Coil 238 258 - -
Vifa5g03909 342 Coils Coil 189 230 - -
Vifa5g03909 342 PANTHER BASIC LEUCINE ZIPPER 63 1 337 - -
Vifa5g03909 342 Pfam Basic leucine-zipper C terminal 247 305 IPR020983 -
Vifa5g03909 342 Pfam Basic leucine-zipper C terminal 304 338 IPR020983 -
Vifa5g03909 342 Pfam bZIP transcription factor 179 231 IPR004827 GO:0003700|GO:0006355
Vifa5g03909 342 MobiDBLite consensus disorder prediction 288 324 - -
Vifa5g03909 342 MobiDBLite consensus disorder prediction 44 71 - -
Vifa5g03909 342 MobiDBLite consensus disorder prediction 149 205 - -
Vifa5g03909 342 MobiDBLite consensus disorder prediction 108 130 - -
Vifa5g03909 342 SMART brlzneu 176 240 IPR004827 GO:0003700|GO:0006355
Vifa5g03909 342 FunFam BZIP transcription factor 178 229 - -
Vifa5g03909 342 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 183 198 IPR004827 GO:0003700|GO:0006355
Vifa5g03909 342 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 178 232 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03909 Vifa-Chr5 1252686717 1252688923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03909 1 270 bZIP Transcription Factor Family AT4G02640 38.264 1.39e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa5g03909 bZIP_C 8.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03909 K25784 - gmx:778137 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03909 5 1252686717 1252688923 Vifa5g03909 5 1252686717 1252688923 ECH