Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03898 ATGGGAAAGGCAAGTAAATGGATTAGAAACCATCTTCTAGGGAAAAAAGAAGAGAACTTCAAGCAGATTGATACTTTCTGCTCGGAGAATAAGACCGCAAACGCGGTTAAAAGTAGTAGCAGTAGTAATAAAATGGTAGTGAAGCGAAAATGGAGCTTTCGAAAACTAACAGGTGGAAGATCAACAAGAAGGATAGTAGCTCATAAAGTTTCCAAGTCTTTTGACTCGATTGATTCTCCGAAATTTCAAATTCAAGCTTTGATGTTCCAAACTCAGACTCCAAGAACAGCTGCTGAGTTTGTAAAAAGAGCTGCTACAAGGATTCAAGCTTCCTTTCGCTCCTATTTGGCAAGGAGGGCACTGCATGCTTTAAGAGGATTGGTGAAGTTACAAGCACTAGTGAGAGGTCATCCTGTAAGGAAACAAACAACTGCAACACTGCGAGGGATGCACGCATTGATGTCTATTCAAGTTAGAGCTCGAATCAAAAGGATTAAGATGGTAGAAGAAGAAAATCCACTCGAAATACAACCTCCCCAACATACAGAAATTCCTTATTTCAAACCTCACAAGACACAACAAAGACAAAATCAAGATTCGAAGAATATGAGTGTGGAAGAAATGTTGGGAGTAATGAGGAGTAGAAGTGGCCCTTTAGATGTAAAAAGCAGAAAGTATGATTCAATGGCATATTATTCAAATCATTTGAAGAAAGAGAATAATCATAATAATACTACAAAAATCATCACAGAACCAAGTAGTCCGGAAAAATACTTCAAAGAAATGATCGATTATTTGAAGCCGACAACATCTCAGCGTGACATGGTACCTCCTAGACAATCATGGTCATCGCCGAATTACATGAACAAGACAGAATCGTCAAAGGCGAAAACAAGGTCTAGTAGTGAACCAAGACAAAGACCAAAACTAGGAACAAAGCAAAAAAGTAGTAAGAGTGTTGAAGGTGGTTTGTTGAAGCAAAATATGTTGTCACATTCAGCAAGGTATGATCATTGGGTTGTTAATTCAATGAAGGAGAGTAAACGTGATTCTTTTGATAGCTGCAGGGTTACTACTAGTGATGATTCCTACTACATGTGA 1101 0.3833 MGKASKWIRNHLLGKKEENFKQIDTFCSENKTANAVKSSSSSNKMVVKRKWSFRKLTGGRSTRRIVAHKVSKSFDSIDSPKFQIQALMFQTQTPRTAAEFVKRAATRIQASFRSYLARRALHALRGLVKLQALVRGHPVRKQTTATLRGMHALMSIQVRARIKRIKMVEEENPLEIQPPQHTEIPYFKPHKTQQRQNQDSKNMSVEEMLGVMRSRSGPLDVKSRKYDSMAYYSNHLKKENNHNNTTKIITEPSSPEKYFKEMIDYLKPTTSQRDMVPPRQSWSSPNYMNKTESSKAKTRSSSEPRQRPKLGTKQKSSKSVEGGLLKQNMLSHSARYDHWVVNSMKESKRDSFDSCRVTTSDDSYYM 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03898 366 ProSiteProfiles IQ motif profile. 102 129 IPR000048 GO:0005515
Vifa5g03898 366 ProSiteProfiles IQ motif profile. 125 152 IPR000048 GO:0005515
Vifa5g03898 366 Gene3D - 100 153 - -
Vifa5g03898 366 MobiDBLite consensus disorder prediction 296 310 - -
Vifa5g03898 366 MobiDBLite consensus disorder prediction 269 323 - -
Vifa5g03898 366 MobiDBLite consensus disorder prediction 273 295 - -
Vifa5g03898 366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 143 IPR027417 -
Vifa5g03898 366 Pfam IQ calmodulin-binding motif 103 121 IPR000048 GO:0005515
Vifa5g03898 366 Pfam Protein of unknown function (DUF4005) 255 342 IPR025064 -
Vifa5g03898 366 PANTHER IQ-DOMAIN 5-RELATED 1 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03898 Vifa-Chr5 1248390317 1248391715 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03898 1 308 IQD Protein Family AT4G14750 35.777 4.30e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03898 - - psat:127129486 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03898 5 1248390317 1248391715 Vifa5g03898 5 1248390317 1248391715 ECH