Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03897 ATGCATGATAGAGTAGAAGTGGTAGCAGCAAACATGTTGGATGAAGGAGTATCAAAGCAGTTTGAGTTTCAGCCATTGAGGACTACTGCTACTACTGCTACTAGTCTTCTTCATGATCAATTCTCGCTTCAAACTCAATCTAATAATAACCTCTTCTACCCATCAATATTTTCATCATTGCCTCACCACTCTTCTAAACAACATCACAATCACACCACCAACTTTAATCATTCATTCAACTTCCAGATCCAAAATCATCATCAATTACCCCCATCACACTTGACCGATTCCGAATGGATTAACGATGAAGGTTTTGCACTTTTCAAGATCAGATCTACCATTGAAAATTGCTTCCCAGATCACCTCACACGGGACCATGTCTCAAGGAAGCTTGAAGAAGTTGGGATTAAGAAGAGTGGTGAGAGGTGCAAGGAGAAGTTTGAAGATGAGAACACATCATTATTGAAGATCAATAACCATAATGATTTTGCTAGTGAGCTTCAAACTCTCTATCAAACTTGTGGTGTTGATGAACAACCTGAAGAAAACGAAAAGATTCAACACGAAGAAGAAAATTCAAGAGATGACGATAACATTGATATTATAGTGACCAAACAATTTGACGATGATGATGACAAAGTTGCGATGGACAGAAATAGAAAGAGGAAGAGTCGGCGACGCGATAAATTTGAAATGTTGAAGTGTTTTTGCGAGACCGTGGTTAACAAAATGATGGCCCAACAAGAAGAAATACACAATAAGCTAATTCAAGACATGCTCAAAAGAGATCAAGAGAAGCTTGCCAGAGAACAAGAATGGAAAAAGCAAGAAATAGAAAGGATGAACATGATGACACAAGAACAAGCTATTTCAAATCATAGACAAGCCACCATAATTGATTTCTTGAAAAAACATCTTTCCACAAATGAAAACATCATTGTCAACAACAAAACTACAAAAGTATGTTCTACTTCAGAATTGCACTCATCACAAAACCCTAATAGTCTTGAATCACCAGATCAAAACCCTAGCTCAAGCGAAACAGTGTTACCAGTTCCTTCAACTTCTTCCAACAACAATAAGAATCCAGTGTTAGAGGATAAGAGAAGGTGGCCAAGAGATGAAGTGTTGGCACTGATAAACCTCAAGTGTACTACAACTGTAATGAACAGAAGAAACAACAAGAATAGTATTGAAGAAAAAAAGGGACCTGTGTGGGAGAGAATCTCTGAAGGGATGTTAGAGTTGGGATACAAGAGAAGTGCAAAGAGATGTAAAGAGAAATGGGAAAACATAAACAAGTATTTTAGAAAAACAAAGGATGTTAATGTGAATAAGAAGAAAAGGAGAATGGATTCAAGAACTTGTCCTTATTTTCATCAACTAAGTTCTTTGTATAATCAGCAGCAGCATGGACAAGTGATTGTTCCTAAAAATCAATTCATATTCAATTCAGATGGCCAAGTTGATGATCAACTCCAAGTTCAATGTGATTAA 1497 0.3681 MHDRVEVVAANMLDEGVSKQFEFQPLRTTATTATSLLHDQFSLQTQSNNNLFYPSIFSSLPHHSSKQHHNHTTNFNHSFNFQIQNHHQLPPSHLTDSEWINDEGFALFKIRSTIENCFPDHLTRDHVSRKLEEVGIKKSGERCKEKFEDENTSLLKINNHNDFASELQTLYQTCGVDEQPEENEKIQHEEENSRDDDNIDIIVTKQFDDDDDKVAMDRNRKRKSRRRDKFEMLKCFCETVVNKMMAQQEEIHNKLIQDMLKRDQEKLAREQEWKKQEIERMNMMTQEQAISNHRQATIIDFLKKHLSTNENIIVNNKTTKVCSTSELHSSQNPNSLESPDQNPSSSETVLPVPSTSSNNNKNPVLEDKRRWPRDEVLALINLKCTTTVMNRRNNKNSIEEKKGPVWERISEGMLELGYKRSAKRCKEKWENINKYFRKTKDVNVNKKKRRMDSRTCPYFHQLSSLYNQQQHGQVIVPKNQFIFNSDGQVDDQLQVQCD 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03897 498 MobiDBLite consensus disorder prediction 324 362 - -
Vifa5g03897 498 MobiDBLite consensus disorder prediction 178 198 - -
Vifa5g03897 498 Gene3D - 371 438 - -
Vifa5g03897 498 MobiDBLite consensus disorder prediction 324 368 - -
Vifa5g03897 498 PANTHER FI21293P1 66 474 - -
Vifa5g03897 498 ProSiteProfiles Myb-like domain profile. 368 433 IPR001005 -
Vifa5g03897 498 CDD GT1 369 440 - -
Vifa5g03897 498 Pfam Myb/SANT-like DNA-binding domain 369 464 IPR044822 -
Vifa5g03897 498 MobiDBLite consensus disorder prediction 177 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03897 Vifa-Chr5 1248123486 1248125077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03897 230 468 Trihelix Transcription Factor Family AT5G28300 47.601 3.01e-67 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa5g03897 Myb_DNA-bind_4 8.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03897 - - psat:127132272 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03897 5 1248123486 1248125077 Vifa5g03897 5 1248123486 1248125077 ECH
Vifa5g03897 5 1248123486 1248125077 Vifa3g01842 3 478925858 478927863 PCT