Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03890 ATGAATGGTGTAACACATCTCGAAACAGATGATGATTCAGATTTTGTCGAAGTTGATCCAACCGGTAGATATGGCAGATACAATGAAATTCTCGGTAAAGGAGCTTCTAAAACTGTATATAGGGCATTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAATCAAATCAAACTGTATGATTTTCTACAAAATCCTGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTTCTCAAGACATTGAAACATAGAAATATAATGAAATTCTATACTTCTTGGGTTGATACTGCAAATAGGAATATCAACTTTGTCACTGAGTTGTTTACTTCTGGTACTCTTAGACAGTATAGGCTAAAGCACAAGAAGGTGAACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCTTGCAAGGACTTCTGTATCTTCATAGCCATGATCCACCTGTGATCCATAGAGATCTCAAGTGTGATAATATTTTCATTAATGGTAATCAAGGGGAAGTTAAGATTGGGGATCTTGGTTTGGCTGCGATTCTCCGGAAATCGCATGCTGCTCATTGTGTAGGAACGCCCGAGTTCATGGCGCCGGAAGTATATGAAGAGGAGTATAATGAATTAGTTGACATATATTCCTTTGGTATGTGCGTGTTAGAAATGGTCACATTTGAATATCCTTATAGCGAATGCAGCCATCCCGCACAAATCTACAAGAAAGTTTCTTCGGGGAAAAAACCAGACGCTTTGTATAAAGTGAAAGATCCCGAAACGCGAGAGTTTGTTGAGAAATGTCTCGCAACTGTATCTCTAAGGCTCTCTGCAAGGGAGCTTCTTGACGATCCTTTTCTTCGAATAGATGATTACGAATATAATTTGGGATCGGTAGTTGTTGAAGAGTTTGTTGACTTGGGTCCTCTTGTTAGTCAATCATTCTTTTCACTCGATCGTAGCTATAGTAACATAAGTACCGAATACTCAAATGGTTTTGGGTATGAAGCAGATTGTTATTCTCATCCGGCTGAGGTTGAACACGGAATTGAACTTTTCGAGTGCCAAGACGATGAAACCTCGAAAGATGTCGACATAAGCATCAAAGGCAAGAGGAAAGACGAAGGTGGCATCTTTTTGAGACTAAGAATTGCAGACAAAGAAGGTCATATTCGAAACATTTATTTCCCGTTTGACATAGAGTTGGATACAGCATTAAGTGTAGCAACCGAAATGGTTGCAGAACTCGACATTACCGATCAAGATGTTACCAGTATAGCTGGTATGATAGATGGAGAAATCGCATCTTTGGTACCGAAATGGAGACGAGGACCGATCAAGGAAACCGCCGACTATGAAAATCAAAGTTTCTGTGAGAACTGTTTGTCGAATCACACTACAGTTACGGATTTTCTTTCCCGTAATCAAAGTGGAAAAAACTTGCAGCTTCTTCAATGCTGCATGCATGGATGTGCTTCAATGCATGGCCGTTTCGAAGAGATTACATTCCAATCCGAGGAGTATGACAACAACGTCAACGAGGATGCGCCTAACATGTCAAGCGAATCAGACTTTTTGCAGTATCAGGAATCATGGAGTCATCATCACGAAAGCCGTGAACTGAGTCCAGTCGAGTCTACTCGAAGCCCTTCAGACGAACATTACGAACTAGGAAACCATTATTTATCGACTAACGGTTCACTACATTGCGGAACCGAGAATGATTACGAGAAAGAGATACAACATGAGTTGAGATGGCTCAAAGCAAAATACCAAATGGAGTTAAGAGAACTTAGAGACAAACAAATCGGACTAGAAGCAAAGTCGCCACATACGAGTAGCAATATAAAACACGAAACAACATCAGAAACCGGAAACGGATTCGATACTGCGATTTACTTTGATAACTACAGGGATCATGATTCTCGAGAACACAAGAGCCAACCCGATTTGGAGATCCGAAGGGCTCAAAATTGCGGCGCGATGTATTCTGATGAAGAAAGTATTACTACTGCAAAGAGTTTCTACACAAGGATGTTGCTTCAAGATACTATACACAGAACTGTTTCTCTTCCTGTTGATGCAGTGGATGTATAA 2082 0.4044 MNGVTHLETDDDSDFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQIKLYDFLQNPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTELFTSGTLRQYRLKHKKVNIRAVKHWCRQILQGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEEYNELVDIYSFGMCVLEMVTFEYPYSECSHPAQIYKKVSSGKKPDALYKVKDPETREFVEKCLATVSLRLSARELLDDPFLRIDDYEYNLGSVVVEEFVDLGPLVSQSFFSLDRSYSNISTEYSNGFGYEADCYSHPAEVEHGIELFECQDDETSKDVDISIKGKRKDEGGIFLRLRIADKEGHIRNIYFPFDIELDTALSVATEMVAELDITDQDVTSIAGMIDGEIASLVPKWRRGPIKETADYENQSFCENCLSNHTTVTDFLSRNQSGKNLQLLQCCMHGCASMHGRFEEITFQSEEYDNNVNEDAPNMSSESDFLQYQESWSHHHESRELSPVESTRSPSDEHYELGNHYLSTNGSLHCGTENDYEKEIQHELRWLKAKYQMELRELRDKQIGLEAKSPHTSSNIKHETTSETGNGFDTAIYFDNYRDHDSREHKSQPDLEIRRAQNCGAMYSDEESITTAKSFYTRMLLQDTIHRTVSLPVDAVDV 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03890 693 Gene3D Transferase(Phosphotransferase) domain 1 108 287 - -
Vifa5g03890 693 FunFam Probable serine/threonine-protein kinase WNK1 10 106 - -
Vifa5g03890 693 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03890 693 SMART serkin_6 25 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03890 693 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 374 427 IPR024678 GO:0004674|GO:0005524
Vifa5g03890 693 CDD STKc_WNK 23 282 - -
Vifa5g03890 693 FunFam probable serine/threonine-protein kinase WNK9 108 287 - -
Vifa5g03890 693 Gene3D - 371 457 - -
Vifa5g03890 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Vifa5g03890 693 SUPERFAMILY Protein kinase-like (PK-like) 28 283 IPR011009 -
Vifa5g03890 693 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 613 - -
Vifa5g03890 693 ProSiteProfiles Protein kinase domain profile. 25 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03890 693 Coils Coil 583 603 - -
Vifa5g03890 693 Gene3D Phosphorylase Kinase; domain 1 8 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03890 Vifa-Chr5 1245571347 1245574425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03890 1 598 MAP Kinase Kinase Kinase AT3G22420 51.543 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vifa5g03890 Pkinase 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03890 K08867 - gmx:100775959 1016.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03890 5 1245571347 1245574425 Vifa5g03890 5 1245571347 1245574425 ECH
Vifa5g03890 5 1245571347 1245574425 Vifa3g01847 3 480179835 480182817 PCT