Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03888 ATGGCCGAGAAAGCTATCACTATCAGAACCAGAAAATTCCTCACCAATCGTCTCCTTTCCCGAAAGCAATTCGTTGTTGAAGCTAATCATCCAGGGAAACCAAATGTTTCTAGGGCTGAGCTTAAGGAAAAGCTGGCAACTATGTATAATGTGAAGGACACTAACACTGTGTTTGTCTTCCAATTCAAAACACATTTTGGAGGTGGAAAATCCACTGGTTTTGGCTTGATTTATGATTCGGTTGAGAGTGCCAAGAAGTACGAGCCCAAGTATAGACTTATCAGGAACGGTCTTGACACCAAAGTAGAGAAGTCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCCAAGAAGATCCGTGGTGTTAAGAAGACCAAGGCTTCTGATGCTGCTAAGGGTGGAAAGAAGAAATAA 414 0.4203 MAEKAITIRTRKFLTNRLLSRKQFVVEANHPGKPNVSRAELKEKLATMYNVKDTNTVFVFQFKTHFGGGKSTGFGLIYDSVESAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03888 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 131 IPR001976 GO:0003735|GO:0005840|GO:0006412
Vifa5g03888 137 Pfam Ribosomal protein S24e 25 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Vifa5g03888 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Vifa5g03888 137 Gene3D - 1 132 - -
Vifa5g03888 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Vifa5g03888 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vifa5g03888 137 FunFam 40S ribosomal protein S24 1 137 - -
Vifa5g03888 137 MobiDBLite consensus disorder prediction 102 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03888 Vifa-Chr5 1244225881 1244227723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03888 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 78.030 9.92e-76 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03888 K02974 - cpap:110814109 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03888 5 1244225881 1244227723 Vifa5g03888 5 1244225881 1244227723 ECH
Vifa5g03888 5 1244225881 1244227723 Vifa3g01848 3 480350049 480351415 PCT