Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03886 ATGGCTTCACAGCAACACGACACCGTTTTCCCCGAAGAAGACATCGACGACGACGAAGACGAATTTCACGAATATGAAGAAGATGAAGAAGACGACGACGTATTAGTCATCGACGAAGAAGAAAACGATCGTCCTTCTTCTACCCGCTCCGTCCCCTCCGTCACCGTCGCCGTCCCCGGCTCCGTCATCTCCAACGGCGTTATCAGACCCCCAATTTTAACTCCAACAGCCACCACCATCGTCTTCCCCGATTCCTTCCCCTCCGATTCAAAACGCCAACAACAACGTATAGATCAAATTGAAGAGAAAAAACCTCTCGAAGATTCACGCAAACTCTTCCAACGCTTATGGACCGACGAAGACGAGATGGAACTCTTACAAGGCTTCCTCGACTACACAACGCAGAGAGGATCTTCTCACCACAACGACACAGCTCAATTCTACGACCAAATCAAATCCAAACTCCAACTCGATTTCAACAAGAACCAGCTCGTCGAGAAGATCCGAAGGTTGAAGAAGAAATACCGTAACGTTCTCAACAAAATCAGCTCCGGTAAGGAATTCGTCTTCAAAACAGCTCACGATCAAGCTACTTTCGAAATCTCGCGCAAGATCTGGAACAACGTCGCGCCGATTGCAGGCGATGTTGCAATAGACGACGAAGAAATCAACCTGAATCCTAGTCAGAGCCCTAACCTTAATTTCAGTCCGGTGATTCTCAAGGCTGAGGCGAATTCAAACACCAGGAAGCGTTCGCGGCCTCGATCCGTTATCAGAACGTTCGAGAAACGCGAATCTATTGATGCTTCTAATTCAATTAGGGATCGTGATTATCTTAATATCAACCTCAATAATCCTAATCCAAATCCTAATCCTATTCCTATTCCGATTCCTATTCCTTTTCCTAATCCAATTCCTAATCCTTACACCACTACTACATCTACTGTTAATGCTGCTATAACACCTACTATTACTGCAACTACTACTACAACTCCTAATGCTAATACTGCGATTAATGCTAATAATTATAGTAATAATTGCAGTAGCATTGGGAATAATGTAGCAGGTGTTATCGAAGAAACACTGAGGAGTTGTTTATCCCCGTTGTTAAAGGAATTGGTAGCCGGTGCAGGCGCAGGCGCGGGTGCGGCTGCTATGGGAGGGCAGGTTGGAGGAGCGCGAGGAGGTTTTGGTTTCTCCATGAATCCGTTGCCGTTTCAGTTCATGAATTCAGGTTTCGGAGGCGGAGAAATCATGGATGAGAAATGGAGGAAGCAACAGATTTTGGAATTGGAAGTGTATTCGAAGAGATTGGAATTGGTTCAGGATCAGATCAAAGCATCTCTCGATGAGTTGCGCGGATCAGGAGGATGA 1374 0.4578 MASQQHDTVFPEEDIDDDEDEFHEYEEDEEDDDVLVIDEEENDRPSSTRSVPSVTVAVPGSVISNGVIRPPILTPTATTIVFPDSFPSDSKRQQQRIDQIEEKKPLEDSRKLFQRLWTDEDEMELLQGFLDYTTQRGSSHHNDTAQFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKISSGKEFVFKTAHDQATFEISRKIWNNVAPIAGDVAIDDEEINLNPSQSPNLNFSPVILKAEANSNTRKRSRPRSVIRTFEKRESIDASNSIRDRDYLNINLNNPNPNPNPIPIPIPIPFPNPIPNPYTTTTSTVNAAITPTITATTTTTPNANTAINANNYSNNCSSIGNNVAGVIEETLRSCLSPLLKELVAGAGAGAGAAAMGGQVGGARGGFGFSMNPLPFQFMNSGFGGGEIMDEKWRKQQILELEVYSKRLELVQDQIKASLDELRGSGG 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03886 457 MobiDBLite consensus disorder prediction 11 39 - -
Vifa5g03886 457 MobiDBLite consensus disorder prediction 1 52 - -
Vifa5g03886 457 Coils Coil 161 181 - -
Vifa5g03886 457 PANTHER BNAANNG10740D PROTEIN-RELATED 9 451 IPR007592 GO:0006355
Vifa5g03886 457 Pfam Protein of unknown function, DUF573 113 207 IPR007592 GO:0006355
Vifa5g03886 457 Coils Coil 431 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03886 Vifa-Chr5 1243309232 1243310605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03886 1 453 GeBP Transcription Factor Family AT5G28040 39.623 1.35e-89 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vifa5g03886 DUF573 1.1e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03886 - - psat:127132285 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03886 5 1243309232 1243310605 Vifa3g01850 3 480451853 480452884 PCT