Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03885 ATGACAACCGTTGGATATGGCGATCTCGTTCCTAATAGTACTATAGCGAAACTACTTGCTTGCCTTTATGTCTTCACTGGTATGGCTCTTGGTGGCTTGATTCTTAGCAAAGCAGCAGATTACATTGTTGAAAAACAGGAAGTGTATCTTGTTAAAGCAATATGCAAAGCCGAGAAACTCGGTCTAGAAGAGGTTTCTAAAGAACTTGTGACTAAGAAAAGCAAATACAAGTTTCTGCTTTCAATATCCACTTTTGTTGTACTCATGATTACAGGAACTGTTTTTCTGTATTTTGTTGAGAAACTAGATTTCGTCGATGCATTCTATTGTGTTTGTTCGACGGTTACGACTTTAGGTTACGGAGATAAGAGCTTCTCAACTCCTATTGGTAGGACTTTTGCTGTGTTTTGGATATTAAGCAGCACCATTTGCTTGGCTCAGTGTTTTGCATATCTTGCTGATTTTTATACGGAAGTTAGACAAAGATCATTGGCGAAAATGGTTCTCACGCGAAATTTTTATATGCATCATTCACTGGGATTGTATACTTTTCTTAATTTGTCGCGTATAATCAACGACGACGACAACAACACCAACACAGACATGTCTATAGCAGCGACCTCCTCACAAAATCATCAATTGTAA 645 0.3814 MTTVGYGDLVPNSTIAKLLACLYVFTGMALGGLILSKAADYIVEKQEVYLVKAICKAEKLGLEEVSKELVTKKSKYKFLLSISTFVVLMITGTVFLYFVEKLDFVDAFYCVCSTVTTLGYGDKSFSTPIGRTFAVFWILSSTICLAQCFAYLADFYTEVRQRSLAKMVLTRNFYMHHSLGLYTFLNLSRIINDDDNNTNTDMSIAATSSQNHQL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03885 214 Gene3D - 59 164 - -
Vifa5g03885 214 Pfam Ion channel 1 43 IPR013099 -
Vifa5g03885 214 Pfam Ion channel 85 157 IPR013099 -
Vifa5g03885 214 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 1 172 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa5g03885 214 SUPERFAMILY Voltage-gated potassium channels 1 47 - -
Vifa5g03885 214 SUPERFAMILY Voltage-gated potassium channels 71 181 - -
Vifa5g03885 214 Gene3D - 1 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03885 Vifa-Chr5 1243307568 1243308212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03885 1 172 Ion Channels AT5G55630 59.884 6.84e-67 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03885 K05389 - gmx:100799492 269.24