Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03882 ATGACTTCAACACCATTGTTATTTACAGTGAGGAGGTTCCAACCAGAGTTGGTGCGTCCGGCTGCATCTACTCCTCGTGAAGTTAAACTACTATCTGACATAGATGATCAACAAGGCTTACGTTTTAATATTCCTCTCATTTTTGTCTTTCATCGTGAACCATCATTGGCTGGAAAAGATCCGGTAGAAGTTCTTAGAAATGCACTGTCGCAAACACTAGTGTATTACTATCCATTTGCGGGAAGGATTATAGAAGGTGTTGGACGCAAGTTGATGGTTGATTGTACTGGTGAAGGTGTCAAGTTCGTTGGTGCTGAAGCTGATGTAACACTTGATCAATTTGGCGACTCTCTCCATCCACCATTCCCTTGCTTCCAAGAGCTTCTCTACGATGTTCCAGGCTCGGAACTAATTATTGACCGTCCTATTCGACTCATACAAGTGACACGTCTCAAGTGTGGTGGTTTGATAGTGGCTATAAGTTTGAACCATACAATGAGCGATGGAACTGGTATGAAACAGTTGATGGATGCATGGGCAGAAATGGCTCGAGGAGCACATCAACCTTCCATTCAACCAATCTGGTGTAGAGAGATCCTCATGGCAAGAGATCCACCACGCGTTACCTACAACCATCGTGAATATGAACAAGTATTTCCACCGAATAATACCATAAATGAAGAAGATACTACAACCATAACCCACCAATCTTTCTTCTTTAAACCTTCAGACATAGCTGCACTTCGTCTCTTGGTTCCATTTCAATGTACCACATTTGATCTTATCACTGCATGTTTTTGGTATTGTCGCACAAAAGCATTGCAGTTAGAGGCAGAAGAAGAAGTAAGATTGATGGTCATCGTCAATGCACGTTCGAGGTTTAACAATAATCACTCCTCACTTGTTGGATATTACGGTAACTGTTTTGCTTATCCAGCAACCTTCACTACAGCAGGGAAGCTTTGTGGAAACTCACTAGGATATGTTGTCGAGTTGATAAGAAAATTAAAAACTCAAGTTACAGAAGAATACATACGGTCTGTAGCAGATTTCATGGTTATTAACGAAAGGTGTTTATTTACAACTGTAAACTCTTGTATTATTTCAGATTTGACTAGAGCTAAATTAAGAGAAGTGGATTTTGGATGGGGTGAAGGGGTGTATGGTGGAGTTGCTAAAGGCGGGGCTGGACCTTTTCCAGGGGCAACTTACATAGTTCCTTATAAGAATGCAAAAGGAGAAGATTGTTTCATGTTACCAATTTGTTTGTCCTCTCAGGTAATGAAAAGGTTTGCTGAGGAGTTAGATCAGATGCTTAATAGCTAA 1326 0.4087 MTSTPLLFTVRRFQPELVRPAASTPREVKLLSDIDDQQGLRFNIPLIFVFHREPSLAGKDPVEVLRNALSQTLVYYYPFAGRIIEGVGRKLMVDCTGEGVKFVGAEADVTLDQFGDSLHPPFPCFQELLYDVPGSELIIDRPIRLIQVTRLKCGGLIVAISLNHTMSDGTGMKQLMDAWAEMARGAHQPSIQPIWCREILMARDPPRVTYNHREYEQVFPPNNTINEEDTTTITHQSFFFKPSDIAALRLLVPFQCTTFDLITACFWYCRTKALQLEAEEEVRLMVIVNARSRFNNNHSSLVGYYGNCFAYPATFTTAGKLCGNSLGYVVELIRKLKTQVTEEYIRSVADFMVINERCLFTTVNSCIISDLTRAKLREVDFGWGEGVYGGVAKGGAGPFPGATYIVPYKNAKGEDCFMLPICLSSQVMKRFAEELDQMLNS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03882 441 Gene3D - 216 435 IPR023213 -
Vifa5g03882 441 PANTHER ACYL TRANSFERASE 4 8 439 - -
Vifa5g03882 441 Pfam Transferase family 13 437 - -
Vifa5g03882 441 Gene3D - 8 215 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03882 Vifa-Chr5 1241384933 1241386716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03882 17 435 Monolignol Biosynthesis Gene Families AT5G48930 27.397 2.34e-45 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03882 K19861 - gmx:100787907 539.265