Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03880 ATGGCTTCATCACCATTAATATTCACAGTGAGGAGGTTCCAACCAGAGATGGTGCAACCAGCAGCTTCAACTCCTAGAGAAGTTAAACTACTATCTGACATAGATGATCAACAAGGTGTCATGTTCGTTGAAGCTGAAGCTGATGTAACACTTGACCAATTTGGTGACTCTCTCCATCCACCATTCCTTTGCCTCCAAGAACTTCTCTACGATGTTTCAGGCTCAGAATTAATTATTGATCGTCCCATTCGACTCATACAAGTGACACGTCTCAAGTGCGGTGGTTTCATAATAGCAATAAATTGGAATCATATCATGGGCGACGCAGCTGGTTTAAACCAGTTCATGAATGCATGGGCAGAAATGGCTCGAGGAGAACATCAACCTTCGATTCAACCTGTCTGGTATAGAGAGATCCTCATGGCAAGAGACCCACCACGCATTACATGCAACCATCTTGAATACGAACAAATACTTCCATCAAACACCATCAAAGAAGAAGATACTTCTACTAGTACTACCATAGTCCATCAATCTTTCTGCTTTAGACCTTCAGACATAGCTGCAATTCGTCTCTTGGTTCCATTTCAATGCACCACATTTGATCTTATTGCTGCATGTTTTTGGTATTGTCGTACAAAAGCATTGCAGTTAGAGCCGGAGAAGGATGTACGAATAATGTGCCTCGTCAATGCACGTTCAAGGGAAGCTTTGCGGGAACTCACTAGGTTATGCAGTAGAATTGATAAGAAAGTTGAAAGGACAAGTTACAGAAGAATACATGCAATCAGTGGCAGATCTTATGTGAATTTTGGATGGGGTGAAGGAGTGTATGGTGGAATTGCAAGAGGTGGGGCTGGTTCGTTTCATGGAGCAAGTTTTATTGTTTCACATAAGAATGCAAAAGGAGAAGAATGTTTGACATTGCCAATTTGTTTGCCTTTAGAAGAGATGGGAAGATTTAAAAAAGAGTTAGATGAGATGCTTGATAACAATAATCAACCTACAAGGAGTGTTTCTAGTTTTGTGAAGTCTACCTTATAG 1044 0.409 MASSPLIFTVRRFQPEMVQPAASTPREVKLLSDIDDQQGVMFVEAEADVTLDQFGDSLHPPFLCLQELLYDVSGSELIIDRPIRLIQVTRLKCGGFIIAINWNHIMGDAAGLNQFMNAWAEMARGEHQPSIQPVWYREILMARDPPRITCNHLEYEQILPSNTIKEEDTSTSTTIVHQSFCFRPSDIAAIRLLVPFQCTTFDLIAACFWYCRTKALQLEPEKDVRIMCLVNARSREALRELTRLCSRIDKKVERTSYRRIHAISGRSYVNFGWGEGVYGGIARGGAGSFHGASFIVSHKNAKGEECLTLPICLPLEEMGRFKKELDEMLDNNNQPTRSVSSFVKSTL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03880 347 Gene3D - 36 157 IPR023213 -
Vifa5g03880 347 Pfam Transferase family 37 235 - -
Vifa5g03880 347 Gene3D - 158 244 IPR023213 -
Vifa5g03880 347 PANTHER ACYL TRANSFERASE 4 37 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03880 Vifa-Chr5 1241042272 1241049603 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03880 39 235 Monolignol Biosynthesis Gene Families AT5G48930 28.641 1.96e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03880 K19861 - var:108341556 296.975