Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03878 ATGACTTCATCACCATTATTATTCACAGTGAGGAGGTTCCAACCAGAGATGGTGCGTCCGGCTGCATCTACTCCTCGTGAAGTTAAACTACTCTCTGACATAGATGATCAACAAGGCTTACGTTTTAATATTCCTCTCATTTTTGTCTTTCATCGTGAACCATCAATGGCTGGAAAAGATCCGGTAGAAGTTCTTAGAAATGCACTGTCGCAAACACTAGTGTATTACTATCCATTTGCGGGAAGGATTATAGAAGGTGTTGGACGCAAGTTGATGGTTGATTGTACTGGTGAAGGTGTCAAGTTCGTTGGTGCTGAAGCTGATGTAACACTTGATCAATTTGGCGACTCTCTCCATCCACCATTCCCTTGCTTCCAAGAGCTTCTCTACGATGTTCCTGGCTCAGAACTAATTATTGACCGTCCTATTCGACTCATACAGGTGACACGTCTCAATTGCGGCGGTTTCATAGTGACAATAAGTTGGAACCATACAAATGGCGATGGAGCCGGTGTGAAACAATTCATGAATGCTTGGGCAGAAATAGCTCGAGGAGCACATCAACCTTCCACTAAACCTATATGGCATCGAGAGCTTTTAATGGCAAGAGATCCACCACGCATTACATGCAACCATCGTGAATACGAACAAATACTTCCATCAAACACCATCAATGAAGAAGACATTACTACCATAGTCCATCATTCTTTCTTCTTTAAACCTTCAGACATAGCTAGACTTCGTGTCTTGGTTCCATTTCACTTTAGTCAATGTACCACGTTTGATCTTATCACTGCATGTTTTTGGTATTGCCGGACAAAAGCATTGCAGTTAGAGCCAGAAGAAGAGGTAAGGATGATGGTCATCGCCAATGCGCGTTCGAGGTTTCGTGCTAAACATTCTTCATTTATCGGGTATTATGGTAATTGTTTTGCATACCCTGCGGCCGTCACCACGGCAGGGAAGCTTTGTGGAAACTCACTAGGTTATGCATTAGAGTTGATAAGAAAATCAAAAGATGAAGTTACAGAGGAATACTTACAGTCTGTAGCAGATTTCATGGTTATTAACGAAAGGTGTTTATTTACAACTGTAAACTCTTGTATTATTTCAGATTTGACTAGAGCTAAATTAAGAGAAGTGAATTTTGGATGGGGTGAAGGGGTGTATGGTGGAGTTGCTAAAGGTGGGGCTGGACCTTTTCCAGGGGCAACTTACATTGTTCCACATAAGAATGCAAAAGGAGAAGAATGCTTAATGTTACCAATTTGTTTGTCCACTGAAGTAATGAAGAGGTTTGCTGAAGAGTTAGATGAAATTCTTCGTAGCCAAAATTATCCTACCACAAGTGTTCCAAGTTTTGTCAAGTCTACCTTATAG 1380 0.413 MTSSPLLFTVRRFQPEMVRPAASTPREVKLLSDIDDQQGLRFNIPLIFVFHREPSMAGKDPVEVLRNALSQTLVYYYPFAGRIIEGVGRKLMVDCTGEGVKFVGAEADVTLDQFGDSLHPPFPCFQELLYDVPGSELIIDRPIRLIQVTRLNCGGFIVTISWNHTNGDGAGVKQFMNAWAEIARGAHQPSTKPIWHRELLMARDPPRITCNHREYEQILPSNTINEEDITTIVHHSFFFKPSDIARLRVLVPFHFSQCTTFDLITACFWYCRTKALQLEPEEEVRMMVIANARSRFRAKHSSFIGYYGNCFAYPAAVTTAGKLCGNSLGYALELIRKSKDEVTEEYLQSVADFMVINERCLFTTVNSCIISDLTRAKLREVNFGWGEGVYGGVAKGGAGPFPGATYIVPHKNAKGEECLMLPICLSTEVMKRFAEELDEILRSQNYPTTSVPSFVKSTL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03878 459 Gene3D - 8 214 IPR023213 -
Vifa5g03878 459 Gene3D - 215 437 IPR023213 -
Vifa5g03878 459 PANTHER ACYL TRANSFERASE 4 8 440 - -
Vifa5g03878 459 Pfam Transferase family 13 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03878 Vifa-Chr5 1239871739 1239876274 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03878 17 440 Monolignol Biosynthesis Gene Families AT5G48930 27.891 2.46e-43 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03878 K19861 - gmx:100792864 561.607