Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03866 ATGGGATGTGTGATTGGTCGTCAAGCAACAACGTCTGAGAAGAAGGTTGATGAGGTTGATAATGGTTGTGAGAAGGAGAAGATTGATGGTGGTGATAGGGTTCAGGTGCCGACGAATCGAGGCGAAAGTAGAAGAAGATTGAAGGCGAATCCGAGGTTAAGTAATCTGCCGAAGCATTTACTTGGGGAACAGGTTGCTGCTGGATGGCCGCCTTGGCTTACTGCTGTGTGTGGGGAGGCTCTTAGTGGATGGATTCCGCGAAAGGCGGATACATTTGAGAAAATTGATAAGATTGGGCAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACTCAGTGACTGGTAAAATTGTTGCTCTCAAGAAGGTTCGTTTTGACAATTTGGAACCAGAGAGCGTTAAGTTCATGGCTAGAGAGATTCTTATTCTGCGAAGGTTGGATCATCCAAATGTTATTAAGCTGCACGGTTTAGTTACATCGAGGATGACTTGTAGTTTGTATTTGGTGTTTGATTACATGGAACATGATTTAGCTGGACTTGCTGCAAGCCCGGAAATCAGGTTTACGGAGTCTCAGATAAAATGTTACATGAATCAGCTGCTATCAGGACTTGAGCATTGTCATAACCGACATGTACTTCACCGTGATATTAAAGGATCAAATCTTCTTGTTGATAATGAAGGAATACTAAAGATTGCTGACTTTGGGTTGGCATCCTTTTTTGATCCAAACCATAGGCATCCCATGACTAGTCGTGTAGTGACACTTTGGTATCGGCCTCCAGAGTTGCTTCTTGGTGCTACAAGTTATGGTGTGGGTGTAGACCTTTGGAGTGCTGGATGCATTTTAGGAGAGTTATTGGCCGGGAAACCAATTATGCCCGGCCGTACAGAGGTGGAGCAACTCCATAAGATATACAAACTATGCGGTTCTCCTTCTGATGAATACTGGAAGATGTCAAAGTTGCCAAATGCTACCTTGTTTAAACCTCGAGAGCCGTACAAGAGACGCATAAGAGAGATATTCAAAGGTTTTCCACCGTCTGCTCTACCCCTTATTGATAATCTTCTTGCAATTGATCCTGTAGAACGGAAAACCGCCTCAGATGCTTTGGGAAGTGAGTTCTTTATGACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATACCCCCCAAGCAAAGAAATGGATGCTAAAAAACGGGATGATGAACTGAGGAGACAAAGAGCTGCAAACAAAACTCGGGTTGATGGTTCAAAGAAGCACCGTACTCGTGATCGTGCTGTGAAAGGTTTTCCTGCTCCCGAAGCCAATGCCGAGCTTCAATCCAATATTGATAGAAGACGTCTAATCACTCATGGAAATGCCAAGAGCAAGAGTGAAAAGTTTCCTCCACCACATCAAGATGCACAGCTTGGTGTTCCTTTGGGATCTTCACATCGTATTGATCCAGAAACTATTCCTGCAGATGCATCTTTCATTTCAACCACATATACTTATTCAAAGGAACCATTCCAAGCTTGGTCGGGTCCAATTGCTAATGCCGCTGATATTGGTTTGCCGATGCGAAAGAAACACTTTGCAGATGTATTTGATTTATCAAAGTCACCTAAAGGTGCCCACAAGGACAAGTTTAAAGGAAAAGGAATTATAGCTTAG 1662 0.4314 MGCVIGRQATTSEKKVDEVDNGCEKEKIDGGDRVQVPTNRGESRRRLKANPRLSNLPKHLLGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDSVTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLHGLVTSRMTCSLYLVFDYMEHDLAGLAASPEIRFTESQIKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLVDNEGILKIADFGLASFFDPNHRHPMTSRVVTLWYRPPELLLGATSYGVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKMSKLPNATLFKPREPYKRRIREIFKGFPPSALPLIDNLLAIDPVERKTASDALGSEFFMTEPYACDPSSLPKYPPSKEMDAKKRDDELRRQRAANKTRVDGSKKHRTRDRAVKGFPAPEANAELQSNIDRRRLITHGNAKSKSEKFPPPHQDAQLGVPLGSSHRIDPETIPADASFISTTYTYSKEPFQAWSGPIANAADIGLPMRKKHFADVFDLSKSPKGAHKDKFKGKGIIA 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03866 553 MobiDBLite consensus disorder prediction 11 45 - -
Vifa5g03866 553 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
Vifa5g03866 553 FunFam probable serine/threonine-protein kinase At1g54610 175 416 - -
Vifa5g03866 553 SMART serkin_6 92 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03866 553 MobiDBLite consensus disorder prediction 7 45 - -
Vifa5g03866 553 Gene3D Phosphorylase Kinase; domain 1 79 174 - -
Vifa5g03866 553 FunFam probable serine/threonine-protein kinase At1g54610 79 174 - -
Vifa5g03866 553 MobiDBLite consensus disorder prediction 386 426 - -
Vifa5g03866 553 ProSiteProfiles Protein kinase domain profile. 92 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03866 553 PANTHER CELL DIVISION PROTEIN KINASE 90 380 - -
Vifa5g03866 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Vifa5g03866 553 CDD STKc_CDK9_like 92 376 - -
Vifa5g03866 553 MobiDBLite consensus disorder prediction 394 426 - -
Vifa5g03866 553 SUPERFAMILY Protein kinase-like (PK-like) 87 382 IPR011009 -
Vifa5g03866 553 Gene3D Transferase(Phosphotransferase) domain 1 175 416 - -
Vifa5g03866 553 Pfam Protein kinase domain 92 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03866 Vifa-Chr5 1237650507 1237653910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03866 84 414 Core Cell Cycle Gene Families AT5G10270 53.026 1.06e-121 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vifa5g03866 Pkinase 1.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03866 K08819 - gmx:100786837 929.472