Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03862 ATGTCTTCTGAATTTCTTAGAATGCTAAACACTTCCGATTATGCATCCGTTATATCAATGAACCTATTTGTAGCATTGTTATGTGCTTGTATAGTCATTGGTCATCTTCTCGAAGATAACCGCTGGGTTAATGAATCTATCACCGCTCTTTTGATAGGTCTTTGTACTGGTGAGGTGATTTTGTTGATAAGTCGCGGTAAAAGCTCGCATCTTCTTGTTTTCAGTGAAGATCTTTTTTTCATATACCTTCTACCTCCCATCATATTCAATGCCGGGTTTCAGGTGAAGAAGAAACGGTTTTTTGTTAATTTCATGACAATCATGATGTTTGGTGCAGTTGGAACATTGATAAGTTGTAGCATCATAAGTTTTGGTGTAATACAAATTTTTAAGAAATTGGGTTTCAATGAACTCGATCTAGGAGATGCTATAGCAATTGGTGCGATATTTGCCGCGACAGATTCAGTGTGCACATTGCAGGTGTTAAACCAGGATGAGACACCTTTACTATACAGCCTTGTATTTGGTGAGGGCGTTGTGAATGATGCTACTTCAGTGGTGCTTTTCAACGCGATCAAAAGTTTTGATTTGGAACGACTTGACCATGGACTTGCTTTGCAATTTTTCGGCAACTTCTTGTATCTGTTTATAGCAAGCACCGTGCTTGGAGTTTTGGGTGGTCTACTTAGTGCTTACGTTATCAAAAAGCTCTATATTGGAAGGCACTCAACTGATCGCGAAGTTGCTCTCATGATGCTAATGGCATACCTTACCTATATTCTAGCTGAATTATGGTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGGATTGTAATGTCTCATTATACATGGCATAATGTGACTGAGAGCTCAAGAATCACTACCAAACATTCATTTGCAACCTTGTCATTTGTTGCCGAGACGTTTCTCTTCCTTTACGTTGGTATGGATGCCTTGGACATGGAAAAATGGAGATTTGTTAGTGATAGACCTGGAACATCTGTTGTTGTGAGTTCAGTATTATTGGCTCTAGTTCTCATTGGAAGAGCAGCATTTGTTTTTCCCTTATCATTCTTATCCAACTTGACAAAAAAGTCACCAAATGAGAAAATAAGCTTTAGGCAACAGGTGATTATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATGGCACTTGCCTACAATCAGTTTACTATGTCGGGACATACTCAACTGCGATTCAACGCTATCATGATCACAAGTACCATCACTGTTGTGCTAGTCAGTACAATGGTGTTTGGTATGATGACTAAGCCACTGATAAGGTTTTTGCTTCCACTCGGCCCCGTTCCAAAACGGAAAAACAGCATGGCGAATCTTGAAAATACTTCACCGAAATCAGTGACAGTGCCATTCCTTGGAGATAATCAAGGTTCTGAAGTTGATCTTGATGCCAGTGATTTTCACCGTCCAAGCAGCATTCGTGATTTACTCACCACTCCAACACATACCGTTCATCGGTTATGGCGTAGGTTTGATGATGCAATAATGCGTCCGGTTTTTGGTGGTAGGGGTTTTGTTCCTGTTTGTCCTACTTTGCCGAAAGAAAATGACAGCCAACCACAGTGA 1614 0.404 MSSEFLRMLNTSDYASVISMNLFVALLCACIVIGHLLEDNRWVNESITALLIGLCTGEVILLISRGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKRFFVNFMTIMMFGAVGTLISCSIISFGVIQIFKKLGFNELDLGDAIAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIKSFDLERLDHGLALQFFGNFLYLFIASTVLGVLGGLLSAYVIKKLYIGRHSTDREVALMMLMAYLTYILAELWYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHSFATLSFVAETFLFLYVGMDALDMEKWRFVSDRPGTSVVVSSVLLALVLIGRAAFVFPLSFLSNLTKKSPNEKISFRQQVIIWWAGLMRGAVSMALAYNQFTMSGHTQLRFNAIMITSTITVVLVSTMVFGMMTKPLIRFLLPLGPVPKRKNSMANLENTSPKSVTVPFLGDNQGSEVDLDASDFHRPSSIRDLLTTPTHTVHRLWRRFDDAIMRPVFGGRGFVPVCPTLPKENDSQPQ 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03862 537 PRINTS Na+/H+ exchanger signature 107 115 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa5g03862 537 PRINTS Na+/H+ exchanger signature 92 106 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa5g03862 537 PRINTS Na+/H+ exchanger signature 78 89 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa5g03862 537 PRINTS Na+/H+ exchanger signature 147 157 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa5g03862 537 PANTHER SODIUM/HYDROGEN EXCHANGER 11 516 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vifa5g03862 537 Gene3D - 139 191 - -
Vifa5g03862 537 Pfam Sodium/hydrogen exchanger family 23 436 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vifa5g03862 537 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03862 Vifa-Chr5 1236859512 1236862493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03862 9 535 Antiporters AT3G05030 75.803 0.0 813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03862 5 1236859512 1236862493 Vifa5g03862 5 1236859512 1236862493 ECH