Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03857 ATGGAGTGCAACAAGGATGAAGCTCTGAGAGCCAAAGAAATTGCTGAGAATAGATTGCAGACTGGTGACTTTGCAGGGGCACTGAAGTTTGCTATGAAAGCTCGGCGACTGTTTCCTGATACCCAGAACATCACTCAGATCATTACTATTTGTGAGGTTCACTGTGCTTCTCAGAACAAACTCTCTACATCTGATATGGACTGGTATGGAATTCTTCTAACTGATAAATTTTCTGAAGAAGCAACGATAAAGAAACAGTATAGAAAACTTGCACTGCTACTTCATCCTGATAAAAATAAATCTGCTGGGGCAGAGGCCGCTTTCAAGTTGATTGTGGAAGCTAACAGAATATTGAGTGACCCAGCAAAGCGTTCTTTATATCACATGAAGATTAGCCGCCTTGCTGGAATTAAAGCACCTCAGGCTCCATCCCATCACCATAATAGTTTTCATTCACAGTTTCATACTCAAAATTCGAAATTGAATAAGCAGGAGACATTTTGGACATCATGCCAACATTGTAATACTAAGTATGAGTACTACAAAAACATTATAAATGCCACCTTGCATTGTCGACAATGTCTTAAACTTTTCAAAGCTCGCGATATAGGGTCACCGGTTGCACCATCAGGACAAACATCATCATTTTACAGACATAAAGATACTCCAAACCACGTGCCACCAAAAGAAGCATCACAAAGTAATGGTGGAAAACCTCATGGTAAAGGACCGGAGGACATGTTTGTGCCCCATCGTCCTGTATATATGACAAAACCTGGGGCCGGAGAGGGGGCCTCTTGTAAAGTTCAAAAGAGTAAAGATGACAATGGGCCCTCTTCTAAGGTTCGAAAGAGTAAAGATGGCCATGGTACTGCTGGTGTGACAAAGGCTGCTGCTGGAACTTCCAACCGTGCTACATCTAAGGCCAAGCCATCACGAACACAAACAAATGTTGGAAGTAAGAGAGCAAGGCAGTCAGCATCAGCAGATTCAGTTGATGGAAATGGCATGGAAGATAGCAATGTTCAAGAAAATGGTGTTGATCCTTCTGGACTTGACACAGGAGTCCATTCTAAGAAATCTTCCAGGAAAAAGCAGCGCGCTTCACACACAGAAACTGCTAGAGATGATGAGTTTGAGAATGGTGGTTTTTTCAATAAGACAAGTCCAACTAGTTTCACTGCTGATGTGGCTGGTCAGAATGGAGAGGCGAAAAACAAAACAAATGGCCAACCTGAAAAAACAGTTTTAAGGAACTCGAAAAGAAAAGAGACATCCAGTCCCAATATTATATTATGTCCCGATCCAGAATTCAGTGATTTTGATAAGGTTAGAGTAAAGGATTGTTTTGCTGCTGACCAATACTGGGCTATTTATGATGATACTGATTCTATGCCAAGATTCTATGCTCGCATCAAGAAGGTTCACTCCCCTTTCAAACTGGAATATACTTGGCTGGAACCAAATCCAGATCTCAAAGATGAGATTGAATGGCATGAAGCAGATTTGCCTATTGCGTGCGGTAAGTACAGACTTGGGAATTCTCAGATAACTAGAGGTACTGATATGTTCTCTCACATGGTGCATTGCGTAAAAGGGAGTGCTAGAGGTTCTTATCTGGTATATCCCATGAAGGGAGAAACTTGGGCAATTTTCAGACATTGGGATATGGGATGGGGTTCTAAACCTGAAAAGAATGCAGAATATCAATTTGAATTTGTGGAAGTCCTTTCTGATTTTGATGAGAAAGATGGTGTTAAAGTTACTTATCTGAGCAAAGTGAAAGGGTTTGTTTGTCTCTTTCAGCAAACTGTGCAGAATGGAGTTGGATTATTTTGTGTTCCACCTAATGAGTTGTATAGGTTTTCACACCGAGTTCCTTCATTTATGATGTCTGGTGATGAAAGGGAAGATGTTCCAAAAGGATCATTTGAACTTGACCCTGCTGGCCTGCCTAAGAGTATTTTTCAGGTTCAAGTTGGCGATCCGGGTGATGTGATGGAGGATGGAATGTTAAACAATGGAGTCAGTTCTTGCAAGGAATCCTCCAAGCGTAAAGTTGATCAGGCAAAGTTTAACGATAGTATTCCCAAAGCAAAATTGCGAGAAAGTGGTGGTCATAAAAAATCACCAAGGTCAAACGCAGAAAATATGGGTAATGGTCATACAAGTACTAGTCAACATATGGTCAGAGAACACGAAAAGAACACTAGCCACAAGGACTACAATCAACCGGAGGGAAGTGAAGCTGCTGCAAGCCAGACCAACAAGAATTTCAAGACACCACAGAAACCCAAGAGAAATTATCACGTGGAGACATCGACAGTTCGAAGGTCACCTAGAGATTTAAGCAAGAAAAATGATGCAGGAGGCGCTGGTGAATGTGCCACTAGCAAGTTGGCTGATAATCATTCCAACACTAACAATGATATTAAGGAAACTGTGTTTTCTCAGTCGGTGGGAAGCGATCACGCGTGCTTGAAAAAAGAATCTGGAGTTGTGGGAGCGAGTTATGACTTTAATAAGGAAAAATCTAGGGAGATGTTTCAGTGTGGTCAGATATGGGCAATATACGGTGATAGAGATAATATGCCTGTTGTTTATGTTCAAATCAAGAGGATTGAATCCTCCTCATCTAATTTTAGGTTGCATGTATCCGAACTTGAACCCTGCTCGACACCAGAAGGTCTCAAACGTGCAATATCCTGTGGCTCCTTCAAAATCAAAAAAGCCAAACCCCAAATTCTTTCTCCCTCAGCATTCTCTCATCAACTAAAAGTTGAACCCATGGAGAACAGTATATATGAAATTTACCCCAAAAAAGGTGAGATTTGGGCTCTATACAAGGACCAGAATTGTGAACTTACTTCTTCAGACCAGGATAGAGGCAGAAGTGAATGTCATATAGTAGAAGTCTTAGCAGATAGTGACAAGAGTATAGAAGTTGTTATTCTGTTGCGTTTTAGCGGATCTCAGCCAATTTTCAAGGCTCCCATTGTGCGGCGATCTAAGACCGGTATAATTGAAATATTAAGAGAAGATGTTGGTAGATTTTCACATCAGGTTCCTGCTTTTCAGCATACTGGAGAAGACGATCTTCATCTCAGAGGGTGTTGGGTGGCCGATCCATCTTCGATTCCTGGTTTTGCAGTGTAG 3156 0.4144 MECNKDEALRAKEIAENRLQTGDFAGALKFAMKARRLFPDTQNITQIITICEVHCASQNKLSTSDMDWYGILLTDKFSEEATIKKQYRKLALLLHPDKNKSAGAEAAFKLIVEANRILSDPAKRSLYHMKISRLAGIKAPQAPSHHHNSFHSQFHTQNSKLNKQETFWTSCQHCNTKYEYYKNIINATLHCRQCLKLFKARDIGSPVAPSGQTSSFYRHKDTPNHVPPKEASQSNGGKPHGKGPEDMFVPHRPVYMTKPGAGEGASCKVQKSKDDNGPSSKVRKSKDGHGTAGVTKAAAGTSNRATSKAKPSRTQTNVGSKRARQSASADSVDGNGMEDSNVQENGVDPSGLDTGVHSKKSSRKKQRASHTETARDDEFENGGFFNKTSPTSFTADVAGQNGEAKNKTNGQPEKTVLRNSKRKETSSPNIILCPDPEFSDFDKVRVKDCFAADQYWAIYDDTDSMPRFYARIKKVHSPFKLEYTWLEPNPDLKDEIEWHEADLPIACGKYRLGNSQITRGTDMFSHMVHCVKGSARGSYLVYPMKGETWAIFRHWDMGWGSKPEKNAEYQFEFVEVLSDFDEKDGVKVTYLSKVKGFVCLFQQTVQNGVGLFCVPPNELYRFSHRVPSFMMSGDEREDVPKGSFELDPAGLPKSIFQVQVGDPGDVMEDGMLNNGVSSCKESSKRKVDQAKFNDSIPKAKLRESGGHKKSPRSNAENMGNGHTSTSQHMVREHEKNTSHKDYNQPEGSEAAASQTNKNFKTPQKPKRNYHVETSTVRRSPRDLSKKNDAGGAGECATSKLADNHSNTNNDIKETVFSQSVGSDHACLKKESGVVGASYDFNKEKSREMFQCGQIWAIYGDRDNMPVVYVQIKRIESSSSNFRLHVSELEPCSTPEGLKRAISCGSFKIKKAKPQILSPSAFSHQLKVEPMENSIYEIYPKKGEIWALYKDQNCELTSSDQDRGRSECHIVEVLADSDKSIEVVILLRFSGSQPIFKAPIVRRSKTGIIEILREDVGRFSHQVPAFQHTGEDDLHLRGCWVADPSSIPGFAV 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03857 1051 Gene3D DnaJ domain 52 147 IPR036869 -
Vifa5g03857 1051 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 1047 - -
Vifa5g03857 1051 Pfam DnaJ domain 67 127 IPR001623 -
Vifa5g03857 1051 MobiDBLite consensus disorder prediction 727 742 - -
Vifa5g03857 1051 MobiDBLite consensus disorder prediction 711 726 - -
Vifa5g03857 1051 MobiDBLite consensus disorder prediction 765 788 - -
Vifa5g03857 1051 Pfam Domain of unknown function (DUF3444) 429 635 IPR024593 -
Vifa5g03857 1051 Pfam Domain of unknown function (DUF3444) 838 1030 IPR024593 -
Vifa5g03857 1051 MobiDBLite consensus disorder prediction 670 807 - -
Vifa5g03857 1051 MobiDBLite consensus disorder prediction 384 415 - -
Vifa5g03857 1051 SUPERFAMILY Chaperone J-domain 60 129 IPR036869 -
Vifa5g03857 1051 CDD DnaJ 67 120 IPR001623 -
Vifa5g03857 1051 MobiDBLite consensus disorder prediction 743 762 - -
Vifa5g03857 1051 SMART dnaj_3 66 123 IPR001623 -
Vifa5g03857 1051 MobiDBLite consensus disorder prediction 206 428 - -
Vifa5g03857 1051 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Vifa5g03857 1051 MobiDBLite consensus disorder prediction 367 382 - -
Vifa5g03857 1051 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vifa5g03857 1051 PRINTS DnaJ domain signature 87 102 IPR001623 -
Vifa5g03857 1051 PRINTS DnaJ domain signature 103 123 IPR001623 -
Vifa5g03857 1051 MobiDBLite consensus disorder prediction 296 348 - -
Vifa5g03857 1051 MobiDBLite consensus disorder prediction 681 710 - -
Vifa5g03857 1051 MobiDBLite consensus disorder prediction 268 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03857 Vifa-Chr5 1235885014 1235888169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03857 4 203 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.039 4.15e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03857 - - mtr:11432260 1521.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03857 5 1235885014 1235888169 Vifa5g03857 5 1235885014 1235888169 ECH