Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03832 ATGGATGAGGTTAGACATGGAGGTAGTAGTAGTTGTAGTAGTGAAGCGGAGCAGACTCAGTCCAGAGCTACGTTTGTTGAAACGGCGTCGTCTTCCTCTTCATCAGGATGGTGTCCCAGGGAGCTTGCTTTTGCTCCTTTTGTGCCGCAGCAACAAAAAGAAGATAAACGAGTTAATGCTGCTGGGAAATCCTCAAAGTATCGTGCACTTGTTAGGAAGCCTTTGGTGGCAAGATTGACCAAGGAAATAGTTGAAACATATCAAATATGCAATCCACAGTTTAAATATTCCGAAGATCTAAATCCAAAGAGATTTTTGACCAGTCCATCTACTGGAGTGCTTAATGATGGCTATGATAATCTAAACTCAGATCTTATTCTGACAGTGAATTTGGTCTTGATCCATGTAGAGAAAAGTAGAAGATATACTGTCAAAGATCTCCTTGGCCACGAGACATTTGGACAAGTGGCCAAATGCTGGGATTCCGATACCAACAGTTTTGTTGCTGTGAAGATCATTAAAAATCAACCTGCGTATTATCAACAGGCGCTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTACGATCCTGAGGATAAGCATCACATTGTTCGTATATTTGATTATTTTGTATATCAACGGCATTTGTGCATATGCTTTGAATTGCTGGACACAAACCTGGGATTGTCACTTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTAGACCGGCTCTATTAAAAGATGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATCCTTTTATGTGCGAGTGCGAATCAAACAGAAATAAAGATTATTGACTTTGGATCAGCATGCATGGAAAACCGCACTGTGTATTCCTATATTCAGAGTCGATACTATAGGTCTCCTGAGGTTCTTCTTGGATATCAATACACAACAACTATTGATATGTGGTCCTTTGGGTGCATAGTGGCGGAATTATTTCTTGGATTACCATTATTCCCCGGGGCTTCAGAATTTGATCTTTTGAAAAGGATGATTGAAATAATTGGGTATGCTACTATCTCTTGA 1071 0.395 MDEVRHGGSSSCSSEAEQTQSRATFVETASSSSSSGWCPRELAFAPFVPQQQKEDKRVNAAGKSSKYRALVRKPLVARLTKEIVETYQICNPQFKYSEDLNPKRFLTSPSTGVLNDGYDNLNSDLILTVNLVLIHVEKSRRYTVKDLLGHETFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIFDYFVYQRHLCICFELLDTNLGLSLGIVQLFSKQILCRPALLKDAGIIHCDLKPENILLCASANQTEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTTIDMWSFGCIVAELFLGLPLFPGASEFDLLKRMIEIIGYATIS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03832 356 ProSiteProfiles Protein kinase domain profile. 142 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03832 356 MobiDBLite consensus disorder prediction 1 36 - -
Vifa5g03832 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Vifa5g03832 356 SMART serkin_6 142 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03832 356 FunFam Dual specificity tyrosine-phosphorylation-regulated kinase 1A 105 221 - -
Vifa5g03832 356 Pfam Protein kinase domain 142 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03832 356 PANTHER DUAL SPECIFICITY PROTEIN KINASE 17 351 - -
Vifa5g03832 356 Gene3D Phosphorylase Kinase; domain 1 106 222 - -
Vifa5g03832 356 MobiDBLite consensus disorder prediction 7 36 - -
Vifa5g03832 356 SUPERFAMILY Protein kinase-like (PK-like) 136 353 IPR011009 -
Vifa5g03832 356 Gene3D Transferase(Phosphotransferase) domain 1 223 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03832 Vifa-Chr5 1228637033 1228641366 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03832 141 351 Core Cell Cycle Gene Families AT1G66750 33.040 3.03e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-YAK Vifa5g03832 Pkinase 7.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03832 K18670 - gmx:100786931 538.88