Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03831 ATGGATGAGGTTAGACATGGAGGTAGTAGTAGTTGTAGTAGTGAAGCGGAGCAGACTCAGTCCAGAGCTACGTTTGTTGAAACGGCGTCGTCTTCCTCTTCATCAGGATGGTGTCCCAGGGAGCTTGCTTTTGCTCCTTTTGTGCCGCAGCAACAAAAAGAAGATAAACGAGTTAATGCTGCTGGGAAATCCTCAAAGTATCGTGCACTTGTTAGGAAGCCTTTGGTGGCAAGATTGACCAAGGAAATAGTTGAAACATATCAAATATGCAATCCACAGTTTAAATATTCCGAAGATCTAAATCCAAAGAGATTTTTGACCAGTCCATCTACTGGAGTGCTTAATGATGGCTATGATAATCTAAACTCAGATCTTATTCTGACAGTGAATTTGGTCTTGATCCATGTAGAGAAAAGTAGAAGATATACTGTCAAAGATCTCCTTGGCCACGAGACATTTGGACAAGTGGCCAAATGCTGGGATTCCGATACCAACAGTTTTGTTGCTGTGAAGATCATTAAAAATCAACCTGCGTATTATCAACAGGCGCTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTACGATCCTGAGGATAAGCATCACATTGTTCGTATATTTGATTATTTTGTATATCAACGGCATTTGTGCATATGCTTTGAATTGCTGGACACAAACCTGGGATTGTCACTTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTAGACCGGCTCTATTAAAAGATGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATCCTTTTATGTGCGAGCAGTGCGAATCAAACAGAAATAAAGATTATTGACTTTGGATCAGCATGCATGGAAAACCGCACTGTGTATTCCTATATTCAGAGTCGATACTATAGGTCTCCTGAGGTTCTTCTTGGATATCAATACACAACAACTATTGATATGTGGTCCTTTGGGTGCATAGTGGCGGAATTATTTCTTGGATTACCATTATTCCCCGGGGCTTCAGAATTTGATCTTTTGAAAAGGATGATTGAAATAATTGGGTATGCTACTATCTCTTGA 1074 0.3957 MDEVRHGGSSSCSSEAEQTQSRATFVETASSSSSSGWCPRELAFAPFVPQQQKEDKRVNAAGKSSKYRALVRKPLVARLTKEIVETYQICNPQFKYSEDLNPKRFLTSPSTGVLNDGYDNLNSDLILTVNLVLIHVEKSRRYTVKDLLGHETFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIFDYFVYQRHLCICFELLDTNLGLSLGIVQLFSKQILCRPALLKDAGIIHCDLKPENILLCASSANQTEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTTIDMWSFGCIVAELFLGLPLFPGASEFDLLKRMIEIIGYATIS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03831 357 PANTHER DUAL SPECIFICITY PROTEIN KINASE 17 352 - -
Vifa5g03831 357 MobiDBLite consensus disorder prediction 1 36 - -
Vifa5g03831 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Vifa5g03831 357 SMART serkin_6 142 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03831 357 FunFam Dual specificity tyrosine-phosphorylation-regulated kinase 1A 105 221 - -
Vifa5g03831 357 Pfam Protein kinase domain 142 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03831 357 SUPERFAMILY Protein kinase-like (PK-like) 136 354 IPR011009 -
Vifa5g03831 357 Gene3D Transferase(Phosphotransferase) domain 1 223 356 - -
Vifa5g03831 357 ProSiteProfiles Protein kinase domain profile. 142 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03831 357 Gene3D Phosphorylase Kinase; domain 1 106 222 - -
Vifa5g03831 357 MobiDBLite consensus disorder prediction 7 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03831 Vifa-Chr5 1228637033 1228641366 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03831 141 352 Core Cell Cycle Gene Families AT1G66750 32.895 3.21e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-YAK Vifa5g03831 Pkinase 1.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03831 K18670 - gmx:100786931 543.888