Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03827 ATGTATTCTGAACCTAACTTCGACTACAACAACTTCAACCTTCAAAATGAACAACAACATGGTTTTCTCAACAACAATTGTTCACCACAAATTGAGGAACTTAATGTGCTCTCAAATCCATCTTTAGATACCTCAATTCCCACTCGTTCTCGCTCCAAGAAACGCAGAGTCAAAACAAGTAAGAACAAGGAAGAAATTGAGAACCAAAGAATGACTCACATTGCTGTAGAACGTAACAGAAGAAAACAAATGAATCACTATCTTTCTATTCTAAGATCTCTCATGCCTCAATCTTACGTCCAAAGGGTTGATCAAGCATCTATAATTGGAGGGGCTATTAACTTTGTGAAGAATCTTGAACAAAGGCTACAATTTCTTGGTGTTGAGAAAGAAAAAGAGGGTAAATTTGATACTATGGATGCAAATAAAAACAAACCCTTTTCTGAATTTTTCACCTTTCCACAATACTCAACAAGTGTTTGTGAGAATGCTTCTGAGACAAAAATGGGTGGTGAAGTTCATCAATCTAGCAATACTATTGCTGACATAGAAGTGACAATGGTTGAAAGCCATGCAAATATCAAAATAAGATCAAAGAAAAGACCAAAACAACTCTTGAAAATGGTTTCTAGTTTGCATGGAATGTGTCTCACAATCTTGCATCTTAATGTCACTACAACTCATGAGTTTCTCTTCTATTCTCTCAGTGTTAAGGTGGAAGATGATTGCAAGTTTGGATCAGTGGATGAGATAGCTTCAGCTGTATACAAAATGTTGGAAAGGATTCAACAAGAGTCAATATTGAATTAA 810 0.3556 MYSEPNFDYNNFNLQNEQQHGFLNNNCSPQIEELNVLSNPSLDTSIPTRSRSKKRRVKTSKNKEEIENQRMTHIAVERNRRKQMNHYLSILRSLMPQSYVQRVDQASIIGGAINFVKNLEQRLQFLGVEKEKEGKFDTMDANKNKPFSEFFTFPQYSTSVCENASETKMGGEVHQSSNTIADIEVTMVESHANIKIRSKKRPKQLLKMVSSLHGMCLTILHLNVTTTHEFLFYSLSVKVEDDCKFGSVDEIASAVYKMLERIQQESILN 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03827 269 MobiDBLite consensus disorder prediction 40 64 - -
Vifa5g03827 269 SMART finulus 74 125 IPR011598 GO:0046983
Vifa5g03827 269 Pfam Helix-loop-helix DNA-binding domain 69 120 IPR011598 GO:0046983
Vifa5g03827 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 119 IPR011598 GO:0046983
Vifa5g03827 269 PANTHER MAX DIMERIZATION, MAD 37 265 - -
Vifa5g03827 269 Gene3D - 58 134 IPR036638 GO:0046983
Vifa5g03827 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 131 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03827 Vifa-Chr5 1226694634 1226695827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03827 4 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 45.693 8.80e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa5g03827 HLH 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03827 - - lja:Lj1g3v4954920.1 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03827 5 1226694634 1226695827 Vifa5g03827 5 1226694634 1226695827 ECH