Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03825 ATGAAAAACGATTCCCTCTTATTCATCCTCCTCCTCCTCTCCGCCGCAAAAGCCCAAGCCCAACCCCGAAACCAAACCAACGACTTAACAGACCCAAATTTCAACCAATTCAACCCCTCCTTCGCCATAATCATAGTCATCTTAGTCGCCGCTCTTTTCCTCATGGGCTTTTTCTCCATCTACATCCGCCGTTGCTCCGATTCATCTCCCTCCAACACCGGCCTCCCTATCATCAACGGCCGCTTAGGTATCACATCTCGCGGACTCGATTCCTCAGTAATTGAAACCTTCCCGGTTCTTCAATACTCCGAAGTCAAGATCCATAAGATCGGAAAAGAGGTGCTGGAGTGCGCCGTTTGTTTATCCGAATTCGAAGACACCGAAACGCTGCGTTTGATTCCTAAGTGTGACCACGTTTTTCACACTGACTGTATCGACGAGTGGCTTTCTTTGCACACAACATGTCCCGTTTGTCGTGCGAATCTCGTTCCAGAACCCGCTGACTCAGTTCACGCTAATCCTAATCCCAATCCCGAGTCGCAACAACAAGATATTGAAGCTCAAAACGACACGGCTCAAACACCAAACGCGGAGGCTGATTCGGTTTTGGTTTCTCCGGAAGTGATTTCGTTGGAGAAAACGCTGAATAGGAATCGAACGCGTGGATCTCAGTCAAACCGGGCGCGTCGGTTTCCGAAGTCGCACTCGACCGGACACTCTTTAATCCAACCGGGTGAGAATACGGACCGGTTTACTTTGAAGCTGCCTTTTGCGGTGAGGAAAGAGTTAATGAACCGGCAGTTACAACGCACGAGTAGTTTGATTGTGTTACCAAGAGAAAGTAGCTCGAGGCATGGGTATCGAATCGGTGAAGGAAGTAGTAAAGGGAAAAGTTCGAGGTGGTTGGACCGGAGTTTAAAATCGGACCGGTGGGTTTTTACCAGGGCACCGTCGTTTTTGGCTAGGGCGTTGTCGTTTAGGTCACCGAGACCAAAGGTTAATAATAGTGACGACGATGAAGGAACTTCTTCTGCTACTGCTCCTATCATGCCGTCATCTGCCGTTGACTCTGCACGCCGTTAA 1083 0.4931 MKNDSLLFILLLLSAAKAQAQPRNQTNDLTDPNFNQFNPSFAIIIVILVAALFLMGFFSIYIRRCSDSSPSNTGLPIINGRLGITSRGLDSSVIETFPVLQYSEVKIHKIGKEVLECAVCLSEFEDTETLRLIPKCDHVFHTDCIDEWLSLHTTCPVCRANLVPEPADSVHANPNPNPESQQQDIEAQNDTAQTPNAEADSVLVSPEVISLEKTLNRNRTRGSQSNRARRFPKSHSTGHSLIQPGENTDRFTLKLPFAVRKELMNRQLQRTSSLIVLPRESSSRHGYRIGEGSSKGKSSRWLDRSLKSDRWVFTRAPSFLARALSFRSPRPKVNNSDDDEGTSSATAPIMPSSAVDSARR 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03825 360 CDD RING-H2_EL5-like 116 159 - -
Vifa5g03825 360 MobiDBLite consensus disorder prediction 173 200 - -
Vifa5g03825 360 FunFam E3 ubiquitin-protein ligase ATL6 79 165 - -
Vifa5g03825 360 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Vifa5g03825 360 MobiDBLite consensus disorder prediction 168 247 - -
Vifa5g03825 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 12 308 - -
Vifa5g03825 360 MobiDBLite consensus disorder prediction 327 360 - -
Vifa5g03825 360 SUPERFAMILY RING/U-box 116 165 - -
Vifa5g03825 360 Pfam Ring finger domain 116 159 IPR001841 -
Vifa5g03825 360 SMART ring_2 117 158 IPR001841 -
Vifa5g03825 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 164 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03825 Vifa-Chr5 1224645581 1224646663 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03825 6 323 Rapid Response to Elicitors AT3G05200 45.732 2.74e-85 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03825 K10664 - gmx:100781706 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03825 5 1224645581 1224646663 Vifa5g03825 5 1224645581 1224646663 ECH