Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03822 ATGCCTTCAAAACAAACCTTCTCCCTCTCCCTCTCCCTCTTCCTCACTCTCATTCTCATCATCTTATTCTTCTTCTTCACAACAAACTCCTCTCCATCCCTCTCCATCACACGCAGATCCCTCCTCACCACCACCCTTACATCCTGCAACTCTCAATCCAACGGAATCATCAACTACCACTGCATTTTCCCCCAATCTCCACTCCTCTCCATCACCTCCCTCTCCCTCCTCCTCATCCTCCATTTCTACATCCTCATCCAAACCGCACAACACCATTTCTCAATCGTAACCACCAAACTCGCCTCTCATCTCAATCTCTCCCCTAGCATGGCCGCCGTTACGCTTCTCGCTCTCGGTAACGGCTCGCCCGACGTCTTCTCCTCTCTCGCCGCTCTTCGCGCCGGTCAGTATCGTACCGGCTTCGGCGCGATTCTCTCCGCCGGTGCTTTTGTATCGGCGCTCGTAGTAGGTTTCGTCGCGATCTATGCGGCGCCGTTTTCGGTTGATCCGGCGCCGTTTGTTAGAGATGTTTTGTTTTACTTAACCGCTGCTATGTTTCTGTTTTACGTTTATCTTAGTGCGGAGATTTTTCTTTGGCAAGCGGTTGGATTCGTTGCGTTCTATCTTTTCTTTGTTGGTTTTGTGTTTTATATGGATTTAGGGATTGCGAATCGGAGGGTAAAGAGTTCGGTGGATCTCGAGGGACAGGTTGAATCGTATTACGATGAAAAATCACCGGGATCTGGAGAAAAAGAAAAGGAGAAACACGCTTCTGGATTAAGAGGATCTTTTCGTTGGATTTCTAAGGCATGGGAGCTTCCTGTCTTGACTCTTTTAAGATTGACAATCCCTCAACCAGCACCCTCGCAATGGAGCAGATTTTATGCATCAGCCAATATTGCTCTTTGTCCACTAGCCCTCTTGTATGCGTGCAACTCATTCATGCCACTGAATCATCCCATAGTTTTCCTCCTCCCTAATACTCTTTTCCCACTCTGGACCGTAGTGCTCATGACAAGCTTCTCTCTTGCATTTCTTCATTTTGTGTTGGAAAAAGAACCCCCAAAAACAGAACATTTGCCTGTGGTGGTTGTAGCATTTGTTATGAGTGTGTTTTGGATATCTACCACAGCTGGAGAGCTGGTGAATTGCCTTGAAGCTTTAGGCACACTTCTCAAACTGTCACCGGCATTCCTAGGTCTTACAGTGCTAGCATGGGGAAATTCAGTGGGGGATCTTGTTGCTGATGTTGCAGTTGCTAAAGCTGGTCATCCAGCAATGGCAATGGCAGGATGCTTTGCTGGACCGATGTTTAACATGCTTGTTGGTCTTGGAACTGCTTTGGTCATACAAACGACAAATATATATCCTAAAGCCTATGAACTTAATTTCCATGTGGGTATAGTGATTGCATTTGTGTTCCTGCTATTAAGCCTCATGGGGTCTCTTTTGGTAATCACTTGGTCTCGATTCCGAGTACCTAGGTTTTGGGGATTCTGTCTCGTGGGCCTCTATATTGCTTTTATGGCGTTGAGTATGGTAGTAGCCATTTTTTCAAGTTGA 1563 0.4664 MPSKQTFSLSLSLFLTLILIILFFFFTTNSSPSLSITRRSLLTTTLTSCNSQSNGIINYHCIFPQSPLLSITSLSLLLILHFYILIQTAQHHFSIVTTKLASHLNLSPSMAAVTLLALGNGSPDVFSSLAALRAGQYRTGFGAILSAGAFVSALVVGFVAIYAAPFSVDPAPFVRDVLFYLTAAMFLFYVYLSAEIFLWQAVGFVAFYLFFVGFVFYMDLGIANRRVKSSVDLEGQVESYYDEKSPGSGEKEKEKHASGLRGSFRWISKAWELPVLTLLRLTIPQPAPSQWSRFYASANIALCPLALLYACNSFMPLNHPIVFLLPNTLFPLWTVVLMTSFSLAFLHFVLEKEPPKTEHLPVVVVAFVMSVFWISTTAGELVNCLEALGTLLKLSPAFLGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGTALVIQTTNIYPKAYELNFHVGIVIAFVFLLLSLMGSLLVITWSRFRVPRFWGFCLVGLYIAFMALSMVVAIFSS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03822 520 Gene3D - 296 515 IPR044880 -
Vifa5g03822 520 Gene3D - 106 231 IPR044880 -
Vifa5g03822 520 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 262 518 - -
Vifa5g03822 520 Pfam Sodium/calcium exchanger protein 363 513 IPR004837 GO:0016020|GO:0055085
Vifa5g03822 520 Pfam Sodium/calcium exchanger protein 75 216 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03822 Vifa-Chr5 1223691252 1223694557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03822 12 520 Antiporters AT1G08960 67.790 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03822 K13754 - gmx:100775437 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03822 5 1223691252 1223694557 Vifa5g03822 5 1223691252 1223694557 ECH