Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03821 ATGATAATAAATAATAGTGTGGGAATTGGCCAATTGGGTAGAAGGAGAAGGGTAAAATCGTCAATAAAAAGACACAAACACAGCTTTATTGTCTTTGAGAGGTTTCTCACTGTTTGCGGAAACAAGCATCGGTTAACAGCTCTTGCGGAACAGTTCATAATGGATCATCAAGGGCATAACCAGAATCCGCCGATGGGGGTTGTCGGTAGTGGAGGTCAAATGCCGTATGGATCTAATCCATATCAGCCAAACCAAATGGCTGGGGCACCTGGATCAGTTGTTACCGGGGGCATGCAATCAACTGGTCAACCTGCTGGAGCTCAGATGGGTCAGCATCAACTTGCTTATCAGCATATTCATCAGCAGCAACAGCAGCAACTTCAGCAACAGCTCCAAGCTTTTTGGGCAAACCAGTACCAAGAAATTGAAAAGGTTACTGATTTCAAGAACCACAGCCTTCCCCTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCAGCTGAGGCACCGGTCATATTTGCAAGGGCCTGTGAGATGTTCATATTGGAGTTAACCCTGCGTTCATGGAACCACACTGAAGAGAACAAAAGGAGGACGCTTCAAAAGAATGATATTGCAGCTGCAATCACAAGGACTGATATCTTTGATTTCCTGGTTGACATTGTGCCTCGTGAGGACTTGAAGGATGAAGTGCTTGCATCAATCCCAAGAGGAACGATGCCTGTTGGTGGTCCTGCTGATGCTCTTAACTACTGCTACATGCCACCTCAACATGCCCCCCAAGTTGGAGCTGCTGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAATATGTATGCTCAGCAGCCTCATCCCTACATGGCACCACAAATGTGGCCACAGCCTCCAGACCAGCGACCACCATCTCCAGATCACTAG 936 0.4679 MIINNSVGIGQLGRRRRVKSSIKRHKHSFIVFERFLTVCGNKHRLTALAEQFIMDHQGHNQNPPMGVVGSGGQMPYGSNPYQPNQMAGAPGSVVTGGMQSTGQPAGAQMGQHQLAYQHIHQQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALNYCYMPPQHAPQVGAAGVIMGKPVMDPNMYAQQPHPYMAPQMWPQPPDQRPPSPDH 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03821 311 Gene3D Histone, subunit A 114 230 IPR009072 GO:0046982
Vifa5g03821 311 SUPERFAMILY Histone-fold 116 224 IPR009072 GO:0046982
Vifa5g03821 311 MobiDBLite consensus disorder prediction 286 311 - -
Vifa5g03821 311 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 110 244 - -
Vifa5g03821 311 Pfam Core histone H2A/H2B/H3/H4 108 215 IPR007125 GO:0003677
Vifa5g03821 311 MobiDBLite consensus disorder prediction 294 311 - -
Vifa5g03821 311 FunFam Nuclear transcription factor Y subunit gamma 117 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03821 Vifa-Chr5 1223600295 1223602488 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03821 54 298 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.789 1.65e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vifa5g03821 CBFD_NFYB_HMF 7.9e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03821 K08066 - gmx:100527803 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03821 5 1223600295 1223602488 Vifa5g03821 5 1223600295 1223602488 ECH