Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03820 ATGAGGCATGATACAAAAGGCAAGGTCGTCGACAAAGTTGATTTACTGAGGAAGAAGCAATACCTTGATTTTGTTGATGCGTGTATTGTTTTAGGTGCACTGTCTTCTATTCATATTCTCGTTTGTCTCTTCACTGCTTGGTCTGTTGATTTCAAATGTTTTGCGTATTATAGCAAGGTTAAAAATATTGATCAGGTTGATTCGTGTAAGATTACTCCGGCTAAGTTTTGTGGTTCTAAAGAAGTTGTGCCGCTTAATTCCCGGAAATCATCTGCAGGTTCTTCAACAGTGGATCTGGAAGATATTTACTTTGATTTTAGAAAACAATGTTTTGTTTATTCGAAGGAGAATGGAACTTTTAACAAACTCTCTTATCCTACGAAGGAAACATTTGGACATTATCTCAAATGTAGTGGCCATGGATCCGAAGCCAAAGCTCTTGCGGCTACCGAGAAATGGGGGCGGAATGTATTTGATTATCCTCAGCCAACATTTCAGAAATTGATGAAAGAGCATTGCATGGAACCTTTTTTCGTGTTTCAGGTTTTTTGTGTTGGTCTCTGGTGTTTGGATGAATATTGGTACTATAGTTTGTTCACTCTATTTATGCTATTTATGTTTGAGTCGACCATGGCAAAAAGTCGGTTAAGGACTCTGACTGAGTTAAGACGTGTTAGAGTGGATAATCAGATTGTTATGGTACATCGTGGTGGCAAATGGGTAAAACTCTCCGGTACAGACCTTTTGCCAGGAGATGTTGTCTCTATAGGCCGTTCTTCTGGTCAGAATGGAGAGGAGAAATTTGTACCTGCAGACATGCTTATATTGGATGGAAGTGCAATTGTGAATGAAGCTATTCTCACAGGCGAGTCTACTCCTCAATGGAAGATTTCTATTGCGGGTAGGGGTATGGAGGAGAAGTTGTCAGCAAAGCGAGATAAAACCCATGTTTTATACGGTGGAACCAAAATATTGCAGCACTCTCCAAATAAGACCTTCTCTCTAAAAACACCTGATGGTGGCTGCTTGGCTGTTGTCCTTAGAACTGGGTTTGAAACAAGTCAAGGAAAGTTGATGCGGACAATCTTATTCTCTACAGAAAGGGTGACTGCTAATAGCTGGGAAAGTGGACTGTTCATTTTATTCTTGGTTGTATTTGCTCTAATTGCGGCTGGTTACGTGTTTACTAAGGGTCTAGAAGACCCCTCAAGGAGCAACTATAAACTTATACTAAACTGTTCTCTTATTGTTACTTCTGTGATACCTCCCGAGTTACCAACGGAATTATCTATAACTGTTAATACTTCTCTGATTGCACTTGCACGCCGAGGAATTTTTTGCACAGAACCTTTTCGGATACCATTTGCTGGGAAGGTTGATATATGTTGTTTTGACAAGACTGGGACACCTTTCTTCCGTCCCTTCTTTCTTCAGTTTCATCGGCAGAATTACCGGTTGGTCAAATGA 1467 0.4029 MRHDTKGKVVDKVDLLRKKQYLDFVDACIVLGALSSIHILVCLFTAWSVDFKCFAYYSKVKNIDQVDSCKITPAKFCGSKEVVPLNSRKSSAGSSTVDLEDIYFDFRKQCFVYSKENGTFNKLSYPTKETFGHYLKCSGHGSEAKALAATEKWGRNVFDYPQPTFQKLMKEHCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLRTLTELRRVRVDNQIVMVHRGGKWVKLSGTDLLPGDVVSIGRSSGQNGEEKFVPADMLILDGSAIVNEAILTGESTPQWKISIAGRGMEEKLSAKRDKTHVLYGGTKILQHSPNKTFSLKTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFALIAAGYVFTKGLEDPSRSNYKLILNCSLIVTSVIPPELPTELSITVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTPFFRPFFLQFHRQNYRLVK 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03820 488 Pfam E1-E2 ATPase 231 443 - -
Vifa5g03820 488 SUPERFAMILY Calcium ATPase, transduction domain A 230 362 IPR008250 -
Vifa5g03820 488 PANTHER CATION-TRANSPORTING ATPASE-RELATED 26 469 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Vifa5g03820 488 Gene3D - 199 363 - -
Vifa5g03820 488 FunFam Cation-transporting ATPase 201 363 - -
Vifa5g03820 488 SUPERFAMILY Calcium ATPase, transmembrane domain M 142 457 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03820 Vifa-Chr5 1223455447 1223456982 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03820 7 469 Primary Pumps ATPases AT5G23630 77.049 0.0 774
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03820 K14950 - vum:124821481 816.609