Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03800 ATGATTGAATTGGTGAACATAATTGGGCCTAAAAAGTGGTCAACTATCGCACAACATTTACCTGGGCGTATCGGGAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCCGCTATAAACAAAGAAGCATGGACACGGGAAGAGGAGTTGGCTCTAATACGTGCTCATCAAATTTATGGGAATAAAAGGGAAGAATTAACGAAGTCATTTCCTGGAAGGACAGACAATGCTATTAAAAACCACTTGAACAGTTCAGTCAAAGAGAAATTGGTCAAAGAGAAATTGGATTCTTACTTGGCATCGGGCTTACTTACTCAGCAGAATCGTGACAAGAAAAGTCATACTAACACCTTCTCTCAGTTTTAA 369 0.3957 MIELVNIIGPKKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTREEELALIRAHQIYGNKREELTKSFPGRTDNAIKNHLNSSVKEKLVKEKLDSYLASGLLTQQNRDKKSHTNTFSQF 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03800 122 Gene3D - 1 41 - -
Vifa5g03800 122 CDD SANT 2 36 IPR001005 -
Vifa5g03800 122 Gene3D - 43 120 - -
Vifa5g03800 122 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 40 IPR017930 -
Vifa5g03800 122 CDD SANT 44 82 IPR001005 -
Vifa5g03800 122 SMART sant 2 38 IPR001005 -
Vifa5g03800 122 SMART sant 41 89 IPR001005 -
Vifa5g03800 122 PANTHER MYB PROTEIN-RELATED 2 108 - -
Vifa5g03800 122 ProSiteProfiles Myb-like domain profile. 1 36 IPR001005 -
Vifa5g03800 122 ProSiteProfiles Myb-like domain profile. 37 87 IPR001005 -
Vifa5g03800 122 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 91 IPR017930 -
Vifa5g03800 122 FunFam Transcriptional activator Myb isoform A 1 42 - -
Vifa5g03800 122 Pfam Myb-like DNA-binding domain 11 51 - -
Vifa5g03800 122 SUPERFAMILY Homeodomain-like 16 95 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03800 Vifa-Chr5 1221906040 1221906408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03800 1 107 MYB Transcription Factor Family AT4G32730 75.701 2.98e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa5g03800 Myb_DNA-bind_6 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03800 - K09420 ini:109190984 182.57