Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03798 ATGCAAGACATTTTCGGATCAGTTCGCCGGTCACTGGTCTTCCGTGCTGGTTCACCGGAGAACGAAGATCACTCACTCGGAGTTGGCGGAACCCTAGTTGACAAGATCGGCTACTGCATCCGTAATTCTAGAGTTTTCTCCAAACCTTCGCCGCTGTCACCGCCGATTCCGAAGGAAAACGTGCCGCAAATCAGATGGCGGAAAGGAGAGTTGATCGGTTGTGGTGCGTTCGGTCATGTTTACGTTGGAATGAATCTCGATTCCGGAGAGCTTCTAGCCGTTAAACAGGTTTTGATTGCAGCAAGTAGTGCTTCGAAGGAGAAGGCACAGGCTCATGTAAAAGAACTTGAGGAAGAAGTTAAACTGCTTAAAGATCTTTCGCATCCCAACATTGTTAGATATTTGGGTACAGTCAGAGAAGAGGATACCTTAAATATTCTCCTGGAGTTTGTTCCTGGAGGTTCCATATCTTCACTGTTGGGGAAGTTTGGAGCTTTCCCTGAGGCTGTCATAAGAACATATACGAAGCAGATATTGCTTGGACTTGAGTACTTGCACAAAAATGGAATCATGCACAGGGACATTAAGGGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGATTTTGGAGCATCCAAACAGGTCGTTGAGCTGGCTACCATGTCTGGTGCCAAGTCGATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCTGACATATGGAGTGTGGGCTGTACCGTAATTGAGATGGCCACAGGAAAACCTCCTTGGAGCCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACTAAGTCTCATCCACCTATTCCTGATCATCTCTCTGCTGGAGCAAAAGATTTTCTTCTAAAGTGCTTACAGAAGGAACCAATCTTGAGGCTATCAGCATCAGAACTGCTGCAGCACCCCTTTGTTACTGGTGAAAATACGAACTCGAATCCTCAGTCTTCTATTGACATGGGAAATTTTAGAGCTTCTTCACCATCATGTGCTCCAAATGTTGAATCCTTACTTTGCAGCTCAACAGCAAATCCCGAGGACTCAGGAAATAATCAATTATGGGGAATGAGCAATGATGATGATGATGACATGTGTGTGATTGATGATAAAGAAGAGTTCTCAGTGTGTGATGTCAAACACAAATCTTTTGTGCCAGATAATTTCGAGAGTTTCAACCCAATGTCTGATCCCTCTGAAGACTGGGGGTGTAAATTTGATGCAACTCCAGAACTGGAAAATAGAGAAGTTAGTCTGGACACTGATGAAAGTTACAAGTCACATACTCAATTGGAGTCTAATAAGGAACAAAAAGATTTATCCTTTCCAAGTGTGCCATCTCTATCAGAAGAAGATGACGAGCTCACCGAGTCCAAAATTAGAGCGTTTTTGGATGAGAAGGCTCTTGAACTGAAAAAACTGCAGACACCTTTATATGAAGAGTTTTTCAACAGTTTAAATGCATCTTGCTCTCCCAATATGATTGATAGCCCAAGTGATGATACCGCTGGTCGAAAATACTTGAGATTGCCTCCTAAAAGCAAATCACCAAGTCGGAAACCATTTGGCTCTCCTTCTAAAGTCGTTGACAATGCTGGAAGTCCTGGAAGTAATGGCAGGTCCTCGTCAGCAGTTGGAAATGTAAATAGTCATGGTTCACAAGATGTTCCAGCAACTCCCATTAATGAACGGAAAGGAATGACAGTTGACTCTCAACAGGAGCCCTTTAGCCCAAGTTTAAGCTTTTCTGAGAGACAGAGAAAATGGAAAGAAGAGCTCGACCAGGAGCTCGAGAGAAAACGAGAAATGATGCGCCAAGGTATGGCAAAGACATCTTCACCAAAGGACCGAGCTTTACATCGACAGCGGACAAGATTTGCTTCTCCCAGCGGACAAGATTAG 1971 0.4399 MQDIFGSVRRSLVFRAGSPENEDHSLGVGGTLVDKIGYCIRNSRVFSKPSPLSPPIPKENVPQIRWRKGELIGCGAFGHVYVGMNLDSGELLAVKQVLIAASSASKEKAQAHVKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQILLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATMSGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSAGAKDFLLKCLQKEPILRLSASELLQHPFVTGENTNSNPQSSIDMGNFRASSPSCAPNVESLLCSSTANPEDSGNNQLWGMSNDDDDDMCVIDDKEEFSVCDVKHKSFVPDNFESFNPMSDPSEDWGCKFDATPELENREVSLDTDESYKSHTQLESNKEQKDLSFPSVPSLSEEDDELTESKIRAFLDEKALELKKLQTPLYEEFFNSLNASCSPNMIDSPSDDTAGRKYLRLPPKSKSPSRKPFGSPSKVVDNAGSPGSNGRSSSAVGNVNSHGSQDVPATPINERKGMTVDSQQEPFSPSLSFSERQRKWKEELDQELERKREMMRQGMAKTSSPKDRALHRQRTRFASPSGQD 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03798 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Vifa5g03798 656 MobiDBLite consensus disorder prediction 438 476 - -
Vifa5g03798 656 MobiDBLite consensus disorder prediction 588 606 - -
Vifa5g03798 656 MobiDBLite consensus disorder prediction 512 656 - -
Vifa5g03798 656 Coils Coil 99 126 - -
Vifa5g03798 656 SUPERFAMILY Protein kinase-like (PK-like) 65 346 IPR011009 -
Vifa5g03798 656 Gene3D Transferase(Phosphotransferase) domain 1 64 354 - -
Vifa5g03798 656 MobiDBLite consensus disorder prediction 553 580 - -
Vifa5g03798 656 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524
Vifa5g03798 656 ProSiteProfiles Protein kinase domain profile. 66 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03798 656 MobiDBLite consensus disorder prediction 607 629 - -
Vifa5g03798 656 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 61 340 - -
Vifa5g03798 656 FunFam Mitogen-activated protein kinase kinase kinase 2 65 357 - -
Vifa5g03798 656 Coils Coil 609 633 - -
Vifa5g03798 656 SMART serkin_6 66 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03798 656 FunFam Serine/threonine-protein kinase STE11 62 156 - -
Vifa5g03798 656 MobiDBLite consensus disorder prediction 438 458 - -
Vifa5g03798 656 Pfam Protein kinase domain 67 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03798 656 CDD STKc_MAPKKK 65 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03798 Vifa-Chr5 1220980222 1220985503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03798 1 652 MAP Kinase Kinase Kinase AT1G54960 56.590 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vifa5g03798 Pkinase 4.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03798 K20606 - gmx:100807537 1024.62