Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03796 ATGCCTGACATGAATTCCTACCATTTTTTGCAACATGTTACACAGCAAATCAAAATTCCAGTCATTATGATGTGTGTTGATCAATCAATAACGCCAAGTATAATGATGAAGGCGATTGAAAAAGGCGCTTGTGGATATTGGATTAAGCCTTTGAGTGAAGGTCAAATCAATAACATATGGCAACATGTTCAAGTTGCTAGTCATCTACAAAAATTTAAACTTCGTTTGAAAAGAGCAACTAAGAGTAAGAAGATAGATGGTATCAGAAACAAAATTGAAGATGCTTCTAGGAGAAGAAAAGCATACGGTTTAGTGCAAATTCAAAGCCGAGTCGTATCTAAGATTCAAATATTACGTGCACGGATGCAACCGTATCTCGCTGCCAAGAAATCCAGTGTGGTTGGATTTGATGATGACACACAAGTTCTGATGACGGAGTTACTGTCAGACGAGAAATGCCGCTGCATTACTTGGATTGTTGGAGTCGGAAGCACAGGTAAGACAACACTAGCCAATTTGATATTTGAAGACAACACTGTTGTAGCTCATTTTCAGCGTCGCGTATGGGTGTCACTGCCTTCAAATTGTACGACAAACCAGTTTGTTGCAGAAATTGGCAAGGAGACCGCCAAGAAAATTACAGTAGAAGAAGAAAACATGCCCACTGATTACGTACTCACAACCTTGGCACACGCAAAGTACCTTATAGTTGTTGATGGCCTTAAAGAAACATCCAAAGTATACTTGGATACCTTGAACAGGGTCATACCTGATATGTTAACAGGAAGCAGAGTTCTTTTTACTACTCGCAATGCAACAGTAGCCCAACATGCAGCAGGTAGAATCATTCTTCACCCATTACAGTTATTAGATGATGAAACTAGTTGGCTGTTGTTCACAAGACATTTGAAGGTCCCCAAGTCAGAAACAGAACTTGTCAAGGTTGAAAAAGAAATTGTGATGAAATGTGGGGGACTGCCATCACAAATACTGAAAATAAGTGATTTGCTTTCACATAAAGATGTTACACATGAGGAAACTCTTAACCCATCCACCTGTTAG 1062 0.3945 MPDMNSYHFLQHVTQQIKIPVIMMCVDQSITPSIMMKAIEKGACGYWIKPLSEGQINNIWQHVQVASHLQKFKLRLKRATKSKKIDGIRNKIEDASRRRKAYGLVQIQSRVVSKIQILRARMQPYLAAKKSSVVGFDDDTQVLMTELLSDEKCRCITWIVGVGSTGKTTLANLIFEDNTVVAHFQRRVWVSLPSNCTTNQFVAEIGKETAKKITVEEENMPTDYVLTTLAHAKYLIVVDGLKETSKVYLDTLNRVIPDMLTGSRVLFTTRNATVAQHAAGRIILHPLQLLDDETSWLLFTRHLKVPKSETELVKVEKEIVMKCGGLPSQILKISDLLSHKDVTHEETLNPSTC 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03796 353 Gene3D - 289 350 IPR042197 -
Vifa5g03796 353 Gene3D - 113 282 IPR027417 -
Vifa5g03796 353 ProSiteProfiles Response regulatory domain profile. 1 64 IPR001789 GO:0000160
Vifa5g03796 353 PANTHER DISEASE RESISTANCE PROTEIN RP 87 343 IPR044974 GO:0006952
Vifa5g03796 353 Gene3D - 1 99 - -
Vifa5g03796 353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 345 IPR027417 -
Vifa5g03796 353 PRINTS Disease resistance protein signature 228 242 - -
Vifa5g03796 353 PRINTS Disease resistance protein signature 156 171 - -
Vifa5g03796 353 PRINTS Disease resistance protein signature 323 337 - -
Vifa5g03796 353 Pfam NB-ARC domain 143 345 IPR002182 GO:0043531
Vifa5g03796 353 SUPERFAMILY CheY-like 1 63 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03796 Vifa-Chr5 1220388830 1220390272 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03796 1 87 Response Regulator Gene Family AT2G01760 42.045 8.55e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03796 - - mtr:25484817 421.009