LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g03796	ATGCCTGACATGAATTCCTACCATTTTTTGCAACATGTTACACAGCAAATCAAAATTCCAGTCATTATGATGTGTGTTGATCAATCAATAACGCCAAGTATAATGATGAAGGCGATTGAAAAAGGCGCTTGTGGATATTGGATTAAGCCTTTGAGTGAAGGTCAAATCAATAACATATGGCAACATGTTCAAGTTGCTAGTCATCTACAAAAATTTAAACTTCGTTTGAAAAGAGCAACTAAGAGTAAGAAGATAGATGGTATCAGAAACAAAATTGAAGATGCTTCTAGGAGAAGAAAAGCATACGGTTTAGTGCAAATTCAAAGCCGAGTCGTATCTAAGATTCAAATATTACGTGCACGGATGCAACCGTATCTCGCTGCCAAGAAATCCAGTGTGGTTGGATTTGATGATGACACACAAGTTCTGATGACGGAGTTACTGTCAGACGAGAAATGCCGCTGCATTACTTGGATTGTTGGAGTCGGAAGCACAGGTAAGACAACACTAGCCAATTTGATATTTGAAGACAACACTGTTGTAGCTCATTTTCAGCGTCGCGTATGGGTGTCACTGCCTTCAAATTGTACGACAAACCAGTTTGTTGCAGAAATTGGCAAGGAGACCGCCAAGAAAATTACAGTAGAAGAAGAAAACATGCCCACTGATTACGTACTCACAACCTTGGCACACGCAAAGTACCTTATAGTTGTTGATGGCCTTAAAGAAACATCCAAAGTATACTTGGATACCTTGAACAGGGTCATACCTGATATGTTAACAGGAAGCAGAGTTCTTTTTACTACTCGCAATGCAACAGTAGCCCAACATGCAGCAGGTAGAATCATTCTTCACCCATTACAGTTATTAGATGATGAAACTAGTTGGCTGTTGTTCACAAGACATTTGAAGGTCCCCAAGTCAGAAACAGAACTTGTCAAGGTTGAAAAAGAAATTGTGATGAAATGTGGGGGACTGCCATCACAAATACTGAAAATAAGTGATTTGCTTTCACATAAAGATGTTACACATGAGGAAACTCTTAACCCATCCACCTGTTAG	1062	0.3945	MPDMNSYHFLQHVTQQIKIPVIMMCVDQSITPSIMMKAIEKGACGYWIKPLSEGQINNIWQHVQVASHLQKFKLRLKRATKSKKIDGIRNKIEDASRRRKAYGLVQIQSRVVSKIQILRARMQPYLAAKKSSVVGFDDDTQVLMTELLSDEKCRCITWIVGVGSTGKTTLANLIFEDNTVVAHFQRRVWVSLPSNCTTNQFVAEIGKETAKKITVEEENMPTDYVLTTLAHAKYLIVVDGLKETSKVYLDTLNRVIPDMLTGSRVLFTTRNATVAQHAAGRIILHPLQLLDDETSWLLFTRHLKVPKSETELVKVEKEIVMKCGGLPSQILKISDLLSHKDVTHEETLNPSTC	353

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g03796	353	Gene3D	-	289	350	IPR042197	-
	Vifa5g03796	353	Gene3D	-	113	282	IPR027417	-
	Vifa5g03796	353	ProSiteProfiles	Response regulatory domain profile.	1	64	IPR001789	GO:0000160
	Vifa5g03796	353	PANTHER	DISEASE RESISTANCE PROTEIN RP	87	343	IPR044974	GO:0006952
	Vifa5g03796	353	Gene3D	-	1	99	-	-
	Vifa5g03796	353	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	118	345	IPR027417	-
	Vifa5g03796	353	PRINTS	Disease resistance protein signature	228	242	-	-
	Vifa5g03796	353	PRINTS	Disease resistance protein signature	156	171	-	-
	Vifa5g03796	353	PRINTS	Disease resistance protein signature	323	337	-	-
	Vifa5g03796	353	Pfam	NB-ARC domain	143	345	IPR002182	GO:0043531

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g03796	Vifa-Chr5	1220388830	1220390272	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g03796	1	87	Response Regulator Gene Family	AT2G01760	42.045	8.55e-13	66.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g03796	-		-	mtr:25484817	421.009

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