Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03789 ATGCTTCATAAGATTGTGGATGTTCTAAGTGGCCATGATGAGAACAAGAACATGATGAGAGGAAAAGTGGTTTTGATGAAGAAAAATGTGTTGGATTTTAATGATTTTAGTGCTTCTATTATTGATAATATTCATGAGTTTTTGGGGAAGAAGGTTTCTCTCCAACTTGTAAGTGATGTTAAGCTTGATTCTGGCAATGGCATGAAAGGAAAACTTGGGAAGCCTGCATATTTGGAAGACTGGATTACCACAAACACATCATTGACAGCAGGCGAATCGACATTCAAAGTTGCATTTGATTCGGACGATGTCGGTGATATTGGAACACCAGGAGCATTTCTAATCAAGAATAATCATCATAGTGAATTCTACTTAAAAAGCTTGACACTAGAAAATGTTCCAGGCCAAGGTGTTATTCATTTTATTTGCAACTCTTGGGTATACCCTGCACAAAAATATCAAAAGGATCGAGTTTTCTTCGCGAACAAGACGTATCGTCTAAGTGAAACGCCGAAGGGACTTGTTAAGTATAGAGAAGAAGAACTAGAGACTTTAAGAGGGAATGGAAATAATGTGCAACTCGAAGAATGGGATAGAGTTTATGATTACGCGTACTATAATGATTTGGCTGATCCTGATAAAGGTTCAGAATATGTCCGTCCGGTTCTTGGAGGGTCTAGCGAATATCCTTACCCTCGGAGAGGAAGGACTAGTAGGCCGCCTGCCAAGTCAGATGCTAATAGTGAGAGTAGATTGAAGCTTGCGATGAGCTTAGACATCTATGTTCCGAGGGATGAAAGATTTGGTCATATCAAATTGGCCGATTTTCTGGCTTATGCATTGAAAGCCATTGCTCAAGTTATCCAACCGGAACTGGAAGCTCTATTTGACAACACTCCTAATGAGTTTGATACCTTTGAAGATGTGCTTAAACTCTATGAGGGTGGGATTAACGTGCCCGGGGGCGTTCTTAAGGTAATTAGAGATAAAATCCCTGCAGAGATACTCAAAGAAATTCTTAGAACGGATGGTGAAAGATTGCTCAAATATCCCGTTCCTCAAGTGATTAAAGAGGATAAATCTGCATGGAGAACCGATGAGGAATTCGCTAGAGAAATGCTGGCTGGTGTAAATCCTGTCATAATCCGTTGCCTGCAGGAATTCCCACCAAAATCTAATCTAGATCCTAAAATCTATGGCGATCAATCTAGTACAATAAAGAAAGAACACGTCGAGAGCAACCTGGATGGACTCACGATTGACGAGGCAATTGCGCAAAAGAAGCTGTTTATATTGGATCACCATGACGCGCTTATGCCATACTTGAGAAGAATAAACTCAACTACTACGAAGACTTACGCTAGCAGGACGATCCTATTCTTGCAAAACAACGGAACTTTGAAGCCACTGGTCATTGAACTGAGCTTGCCACATCCCGAAGAAGATCAAAAGGGTGCCATTAGTGAAGTCTACATTCCTGCAGAAAATGGCGTCGAAAATTCTATCTGGCAGTTGGCTAAAGCTTATGTAGCAGTAAATGACTCTGGCTATCACCAACTTATCAGCCACTGGTTGCATACTCATGCGGCGATTGAGCCATTCGTTATATCTGCAAACAGGCAACTTAGCGTGCTTCACCCGATTCATAAACTATTGTATCCTCACTTCCGCGACACAATGAATATAAATGCACTCGCGCGTCAAATCCTCATCAATGCAGGTGGCATTCTAGAGGCCACAGTTTTTCCAGCCAAGTATTCGATGGAGATGTCATCCGCGCTTTATAAAGACTGGACTTTCCCCGAACAAGCACTACCCGTAGATCTTATCAAAAGAGGAATGGCTATTGAAGATTCATCGTCACCGCATGGTCTTCGACTATTGATCAACGATTACCCTTACGCAGTTGACGGGCTAGAGATTTGGTTTGCCATCAATACATGGGTTCAAGACTATTGTTCCTTCTACTACAAGACTGATGAAACAGTGAAAAAAGATGTAGAACTACAATCTTGGTGGAAGGAGTTAATCGAAAAAGGCCACGGTGACAAGAAAGACGAGGCGTGGTGGCCAAAGATGCAAACAGTTAAAGAGTTGATCGACACTTGCACAATCATTATATGGATTGCTTCTGCTCTACACGCAGCTGTAAACTTCGGACAATATCCTTATGCAGGTTACTTGCCAAACAGGCCAACGATAAGTCGAAAGTTCATGCCTGAGAAAGGAACTGAAGATTATGATGAACTCGTGGCGAATCCTGATAAGGCTTTCTTGAAAACAATCACAGCGCAATTGCAGACACTCGTTGGCATTTCGCTTATAGAGCTATTGTCTACACATTCTTCTGATGAGGTCTATCTTGGACAAAGAGATGCTGAGAATTGGACAAATGATGCCGAGGCTTTGGAAGCATTTGAGAGATTTGGAAAGAAGTTGAAGGAGATTGAAGAGAGGATTGTAGCTATGAATGGTGATGTTAGTTTGAAAAATAGAGTTGGAGAAGTTAAAGTTCCATACACTTTGCTTTATCCTACTGGTGAAAATGGATTAAGTGGTAAAGGCATTCCCAATAGTGTCTCCATATGA 2589 0.4144 MLHKIVDVLSGHDENKNMMRGKVVLMKKNVLDFNDFSASIIDNIHEFLGKKVSLQLVSDVKLDSGNGMKGKLGKPAYLEDWITTNTSLTAGESTFKVAFDSDDVGDIGTPGAFLIKNNHHSEFYLKSLTLENVPGQGVIHFICNSWVYPAQKYQKDRVFFANKTYRLSETPKGLVKYREEELETLRGNGNNVQLEEWDRVYDYAYYNDLADPDKGSEYVRPVLGGSSEYPYPRRGRTSRPPAKSDANSESRLKLAMSLDIYVPRDERFGHIKLADFLAYALKAIAQVIQPELEALFDNTPNEFDTFEDVLKLYEGGINVPGGVLKVIRDKIPAEILKEILRTDGERLLKYPVPQVIKEDKSAWRTDEEFAREMLAGVNPVIIRCLQEFPPKSNLDPKIYGDQSSTIKKEHVESNLDGLTIDEAIAQKKLFILDHHDALMPYLRRINSTTTKTYASRTILFLQNNGTLKPLVIELSLPHPEEDQKGAISEVYIPAENGVENSIWQLAKAYVAVNDSGYHQLISHWLHTHAAIEPFVISANRQLSVLHPIHKLLYPHFRDTMNINALARQILINAGGILEATVFPAKYSMEMSSALYKDWTFPEQALPVDLIKRGMAIEDSSSPHGLRLLINDYPYAVDGLEIWFAINTWVQDYCSFYYKTDETVKKDVELQSWWKELIEKGHGDKKDEAWWPKMQTVKELIDTCTIIIWIASALHAAVNFGQYPYAGYLPNRPTISRKFMPEKGTEDYDELVANPDKAFLKTITAQLQTLVGISLIELLSTHSSDEVYLGQRDAENWTNDAEALEAFERFGKKLKEIEERIVAMNGDVSLKNRVGEVKVPYTLLYPTGENGLSGKGIPNSVSI 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03789 862 FunFam Lipoxygenase 362 495 - -
Vifa5g03789 862 ProSitePatterns Lipoxygenases iron-binding region signature 2. 545 555 IPR020834 GO:0016702|GO:0046872
Vifa5g03789 862 FunFam Lipoxygenase 497 861 - -
Vifa5g03789 862 Gene3D - 272 361 IPR027433 -
Vifa5g03789 862 SUPERFAMILY Lipoxigenase 167 862 IPR036226 -
Vifa5g03789 862 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 19 165 IPR036392 GO:0005515
Vifa5g03789 862 PRINTS Lipoxygenase signature 500 517 IPR013819 GO:0016702|GO:0046872
Vifa5g03789 862 PRINTS Lipoxygenase signature 518 535 IPR013819 GO:0016702|GO:0046872
Vifa5g03789 862 PRINTS Lipoxygenase signature 538 558 IPR013819 GO:0016702|GO:0046872
Vifa5g03789 862 ProSitePatterns Lipoxygenases iron-binding region signature 1. 518 532 IPR020833 GO:0016702|GO:0046872
Vifa5g03789 862 MobiDBLite consensus disorder prediction 223 248 - -
Vifa5g03789 862 Pfam PLAT/LH2 domain 66 160 IPR001024 GO:0005515
Vifa5g03789 862 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 164 862 IPR013819 GO:0016702|GO:0046872
Vifa5g03789 862 Gene3D - 362 495 - -
Vifa5g03789 862 Pfam Lipoxygenase 173 845 IPR013819 GO:0016702|GO:0046872
Vifa5g03789 862 CDD PLAT_LH2 19 162 IPR042057 -
Vifa5g03789 862 Gene3D - 167 271 - -
Vifa5g03789 862 SMART LH2_4 17 162 IPR001024 GO:0005515
Vifa5g03789 862 Gene3D PLAT/LH2 domain 10 165 - -
Vifa5g03789 862 ProSiteProfiles PLAT domain profile. 34 161 IPR001024 GO:0005515
Vifa5g03789 862 FunFam Lipoxygenase 167 271 - -
Vifa5g03789 862 FunFam Lipoxygenase 272 361 - -
Vifa5g03789 862 PRINTS Plant lipoxygenase signature 387 406 IPR001246 GO:0016491
Vifa5g03789 862 PRINTS Plant lipoxygenase signature 157 178 IPR001246 GO:0016491
Vifa5g03789 862 PRINTS Plant lipoxygenase signature 348 364 IPR001246 GO:0016491
Vifa5g03789 862 PRINTS Plant lipoxygenase signature 775 789 IPR001246 GO:0016491
Vifa5g03789 862 PRINTS Plant lipoxygenase signature 131 149 IPR001246 GO:0016491
Vifa5g03789 862 PRINTS Plant lipoxygenase signature 230 249 IPR001246 GO:0016491
Vifa5g03789 862 PRINTS Plant lipoxygenase signature 453 477 IPR001246 GO:0016491
Vifa5g03789 862 PRINTS Plant lipoxygenase signature 300 321 IPR001246 GO:0016491
Vifa5g03789 862 PRINTS Plant lipoxygenase signature 197 213 IPR001246 GO:0016491
Vifa5g03789 862 PANTHER LIPOXYGENASE 18 862 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vifa5g03789 862 Gene3D - 496 861 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03789 Vifa-Chr5 1219112483 1219116315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03789 1 862 Acyl Lipid Metabolism Gene Families AT1G55020 68.938 0.0 1253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03789 K15718 - gmx:100815550 1411.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03789 5 1219112483 1219116315 Vifa5g03789 5 1219112483 1219116315 ECH
Vifa5g03789 5 1219112483 1219116315 Vifa3g01919 3 490136952 490146882 PCT