Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03788 ATGTCCGATTCACAGTCAAATTCAGAGGTTTTCACCGTTCGGATCGTCTCCATAGACCATTACATGGCACCGCCAATCCCCGCCACCGATATCTCTTACAGCACCTTCCAAGGCGGAAAAGTGAACGAAGTTCCTGTGATAAGAGTGTACGGTTCTACTCCCGCTGGCCAGAAAACTTGCTTGCACATACATGGAGCTTTACCTTATTTATATGTGCCGTGTTCAGATATACCACTTCAACTAGACCGAGAAGGTGATGCATACACCTATGTTTTAGCTGCTTCACTCGAGAAAGCTTTGAAGCTTAAAGGCAGTGCTGGTTCATCAAGACAACATGTACATGGCTGCAGCCTTGTACGAGCAAGGAAATTTTATGGATATTGCTCATTCGAAGAGTTTTTTGTAAAGATTTACCTATATTATCCTCAAGATGTCTCTCGTGCAGCAACTCTTCTCTTGGCTGGTGCTGTTCTTGATAAAAGTTTACAGCCTCACGAATCACACATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAATTTGTATGGCATGGGTCATTTACATCTATCAAAGATGAGGTTCCGCCACCCCATGCCGGATTCTATTCACAAGAAATTAGACTTCAATAGCCAGCACGAAAAGGCAGATCTAGGTGCTGATGCATGCTTAGGGTCAAATGAATTTGGTACTTCGGCAAGTGATAAGGCTCACTGTCCTAAGCGTCAAAGCATCTGTGAGCTTGAAGGAGATACTTCTGTAGATGATATTCTTAATCAGCAGTTTAAAATGTTTTCATCTCTCTCACAAACAAGATCAAATGTAAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAGCGGAAACGGACAGGGGTTCACGAGGCTACTATGCCTTCTGATCCTGGTAAACCACTTCCAGAAGATGTCATGAAACTTCTCTCATCTGGTCTTGACTCTGAGAAAAAACTTCTTCAATTGCGCAGTGAAGCTGAGACCACTTTATTTTGCACTCCTTTAGAGAAGGAACTCAGAGAAACAGACATAATAGGCTCAGCATCGCCACCACCATCACTGTGTAAAAATGCCAAACTTCTTAAGGAAGGGACTGACACAAGTCCAAAGTTGTTGAAAATTGGTGAAATGCAATCAGCTGGAAATATTGGAATGTTGGACATTAAGGATGCTGATATGGAAGCACACAATCTTCTCAAGTGGCTTGCGACTTCTCAAACGGAAGAGGATATAAACTCTGATGACGAACTTGCATGTGAAACAGCCTTGAGCCCCTTGCTTCCTGCTGCAACAGTTGATAAGATGCTAGAGAAAGCGAATATAGCTTTCGAGAATGAGTCGCAGCAGGAGTGTCAGGATATTCTAGATTCAATTGATGATACGCTTGAGTTAGACCAACCAAAGGAAAAGCCTTCTCGTTCCGTTGATCACATTTGTCCTGTTGAAGCTTCATCAGGCATCATGATACCCCAAGTTGATGGTTCTAATGATGATGAGTTCCCAAGTCCACGTGCTAGTTTGGCTGGAATCTCTAATGCAGTTGAGGTAAACAATGAATACAAAAGAGCTTCTGAGTACCATTTACTGCAGAATACTGACACAAGTACAGTTCCTGCAGACAAACAGAATAGGAAATGGGGATCTTTGCCTTTTTCCATGACCGGGAAGGTTAATAATGATAGCAAAGATTCTGTTCTCTCCGATCACTTAATCAGAAATGAGGTTAAAAATAGTACTTGTATTAAAAGAAATGTTGCCGAAGGCGCTTCAAATTCAAAAGAAGTTTATAGTTTGGTTAACTGTTCGTTAAGGGACTTGATGAGACGAAAGCGATCCTATCGAGTTGAACATGATGACCGGGAACCTGAAAATGCAAAGAAGCTTATTTTGGACAGGCATGGGGGACCAAAAACATGCCTTTGGCCAAAACAAATTGAATTGGAAGCAATGCAAACCGATGAAGTAGAAACTGAACTCCAGAAAAATTCCGATCATGAAGTGAGAGGTCTTGATTATTTAGTGTGTGGGAAACAGTTGCTTCCATCTGCAAATCGAAGTTCTTCTCCAATGCATGAAGGGCAAGGCCTGCTTGAAACTTCACATTTAAATTATTCCATGGACAAATCTGTGGCTTGGAGGGAGAAAAACCCTAAGGATGAAACAACTTATGCTAAACCTGTAGCTTCTGATGCTTATACCCCTAATCCCTCTCTAGGCACTCAGTTGAGAACTGATGTTGATCATAAAGTCAGAGCTCCTGAGAGGTGTCAGCAAACTGATTATACTGCTTTTGGTAGTAGACAGAACACATTAGTTGATGATGAAGTTCCACGAAAAAGTAACTGCATGGATAGAATTTCTTGTGGTAACATATGTTCTGTGCCGCATGATCAGATGAAGTCTTATGAGCATGCCGTGGGAAAAAGTGCTGCAAGTGACACAAGAGTATTGCTAAGTGAAAAGGCTGATAATCAGAAGCTGGATAAAAATTTGCCGCGTGAGACTGTTGGCTCAGAACTCGTTGTTGATGACCTGAAGAGTAATCACATGAAATTAACTGAAACAACCGTAGGAAATAGCTCTTCAATTGACAAGAATCTCGAAAGTAATTTGTCCTTGCCAACCTTCTTTGATACTAGTTTACATTTGGATGAGGATGATGAAATGCCAGGGAATGCTCTGGATGTTTTTCTTCCTATTTCTGCAAGGAATTCCCAGAAACAGATGGATCCTAGGAACAACTGTGTTACTATTAAAACTCCCAGATCCTCTGGGACAAAGAACGTTCCTACTTACTATCAAAATGACGGCTCTCAACTATACCTATTAACACCTAATATTTTGCCTCCTTCTGCCGGTTCTGTGCAGAGATGGCTATTTTGTGATGAAAGAGAGGATCAGGATGTACCTAAATGCACTTCTGGACCTCTTCTCATGCATACTCCTGATCAAATGCGTCAAGAACCTGGTGCAGAGGATAAGGACATGTCTAGACACACTCCTGGATCTCCTCTTAGGCATGGGCTGTATAAAGATGCTGACACTGAAAAGAAGCTTCCATGCTTTAGCGAAGGACAAACAGAAAGAATAAAAGCATGCCTGGATGGCTCGCAAGATATTTCTCAGATATCAGGCCCGGAGGAGAAATCAAGTTTTACCCCTCTAAGCCAAATTGGATTTCAAGACCCTGCAAGTGTTGGCCGTGGACAGCAATTAACATTACTCAGTATAGAGATTCTTGCAGAATCTAGAGGAGACCTTTTACCTGATCCTCAATTTGATGGGGTAAATATTGTAGCTCTTGGTTTTCAAAACGATTGTGATGCTACTATTGAAGTTGTAGTTCTTTTGCATAGTAAATATGTACCTTGTCAGAGAAGTCTTGATGGTCTATCAAACTGCAAAGTACTGAACTTCACTGATGAGAAGCACTTGTTTAAAGAATTTACGAAGCTTGTGTCGTCATCTGATCCAGATATATTGATGGGCTGGGATATTCAAGGGGGTTCTCTTGGTTTTTTAGCAGAAAGAGCTTCACATCTCGGTTTGGGATTACTTAATGATTTGTCTCGCACTCCATCTAATTCTTGGATTAATTCTCAAGACATCAAAATATCTGAAAAAAGCATCTTGGAACTGGACATCCTGGATACTCCTAGTCAAGATTGTTGTGTACAAGAGAGTTCAATGATCGAGGATGAATGGGGAAGAACACATGCTAGTGGAGTTCATGTTGGTGGAAGAATTGTCCTTAATTTATGGAGATTGATTCGCGGAGAAGTCAAGCTGAATTTGTATTCAGTTGAAGCTGTTGCTGAAGCTGTATTGAGGCGAAAAGTTCCTTCACTTAACAACAATGTGCTGACAAAATGGTTTTCAAGTGGTCCAGGACAAGCAAGATATCAGTGTATCAAATACATTGTGGATAAAGCAAAGCTAAACCTTCAGATATTAAACCAACTTGATATGGTTAATCGAACATCAGAACTTGCTCGCGTCTTTGGAATAGACTTTTTTTCTGTTCTTTCTCGAGGCTCCCAATACCGTGTTGAATCCATGTTTTTGAGGTTGGCCCACACACAAAATTATGTTGCTATCTCGCCGGGAAAACAACAGGTTGCTTCTCAACCTGCCATGGAATGCCTGCCGCTAGTAATGGAACCAGAGTCAGGATTTTATTCAGATCCTGTTGTTGTACTTGACTTCCAATCTTTATATCCGTCAATGATAATTGCATACAATCTTTGCTTTTGTACATGTCTTGGCAAAGTCGGGGCATCAAAGACTAACACACTTGGGGTAAGTCCATTTTCACCAGAGCAACATGTTGTGCAGGATTTAAAAGATCAAATTTTGCTCACTCCAAATGGTGTTATGTTTGTTCCTTCCAAGGTTCAAAGAGGTATACTTCCCCGTCTACTGGAAGAAATTTTATCAACTAGAATAATGGTAAAACAAGCAATGAAAAAGTTGTCTCCTTCAGAACAAGTCCTTCAGCGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTCATATCAAATGTTACATATGGTTACACAGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCGGAACTTGCAGACAGCATTGTTCAATGTGGGCGCTGTACCCTGGAAAAGGCTATATCATTTGTAAATCTACAAGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTACTTAAAGGACGCACTGTCAAAGAGGCCTTCCAAATTGGGAGTGAAATTGCTGCTGCTGTCACTGCTATGAATCCTAGCCCTGTCACCTTGAAGATGGAGAAAGTTTATCACCGTTGTTTCCTCATTACTAAAAAGCGATATGTTGGCTACAGTTATGAAAGCCCTGATCAAACTGAACCTGTTTTTGATGCCAAAGGTATTGAAACAGTACGCAGGGACACATGTGAAGCAGTTGCTAAGATAATGGAGCAATCTTTGAGACTCTTTTTTGAGCACCAGAGTTTATTGGAGGTGAAGACTTATTTGCAACGTCAGTGGAAGAGAATTCTTTCAGGCAGAGTTTCCCTAAAGGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCAACTAAGGCAATGAGGGTTGATCGAAGGGCTGAACCACGTTACGCGGAGAGAATACCTTATGTTGTAATCCATGGAGAGCCTGGAGCCCGTCTGGCTGACATGCGATTATTTGGGCTTGTTGGTGCCGACCTGAACCTGTGGTTTGCAGAGATGCCTCGCCCTATAAGAGAAGCTTCGGTAAAGCGTGCATTCACTTCAAACATCCATCGAACCAGAATTGATTCGTACTATCTCTCAAAACATTGTGTACTCTGTGGTGGGTTGGTCCAGGCATCAGCCCGTTTATGTAATCAATGTTCTGCAAATGAGGCGGCTGCTGCGACAGCAGTGATTGGTAAAACTTCGAAGTTGGAGCAAGAGATGCAACATCTCGTGTCTATATGTCACCACTGTGGAGGCGGCGATAGGCTGCTCGAAAGTGGTGTGAAGTGCACGTCGATTTCATGCTTGGTGTTTTATGAGAGGCGAAAAGTTCAGAAAGAACTACTTGCCTCTACCAATGTTGCTGCAGATAAAGGCTTCTATCCAAGATGCACGATTGAATGGTTTTGA 5718 0.4176 MSDSQSNSEVFTVRIVSIDHYMAPPIPATDISYSTFQGGKVNEVPVIRVYGSTPAGQKTCLHIHGALPYLYVPCSDIPLQLDREGDAYTYVLAASLEKALKLKGSAGSSRQHVHGCSLVRARKFYGYCSFEEFFVKIYLYYPQDVSRAATLLLAGAVLDKSLQPHESHIPFILQFLVDYNLYGMGHLHLSKMRFRHPMPDSIHKKLDFNSQHEKADLGADACLGSNEFGTSASDKAHCPKRQSICELEGDTSVDDILNQQFKMFSSLSQTRSNVNMVQSLVPIWEEQRKRTGVHEATMPSDPGKPLPEDVMKLLSSGLDSEKKLLQLRSEAETTLFCTPLEKELRETDIIGSASPPPSLCKNAKLLKEGTDTSPKLLKIGEMQSAGNIGMLDIKDADMEAHNLLKWLATSQTEEDINSDDELACETALSPLLPAATVDKMLEKANIAFENESQQECQDILDSIDDTLELDQPKEKPSRSVDHICPVEASSGIMIPQVDGSNDDEFPSPRASLAGISNAVEVNNEYKRASEYHLLQNTDTSTVPADKQNRKWGSLPFSMTGKVNNDSKDSVLSDHLIRNEVKNSTCIKRNVAEGASNSKEVYSLVNCSLRDLMRRKRSYRVEHDDREPENAKKLILDRHGGPKTCLWPKQIELEAMQTDEVETELQKNSDHEVRGLDYLVCGKQLLPSANRSSSPMHEGQGLLETSHLNYSMDKSVAWREKNPKDETTYAKPVASDAYTPNPSLGTQLRTDVDHKVRAPERCQQTDYTAFGSRQNTLVDDEVPRKSNCMDRISCGNICSVPHDQMKSYEHAVGKSAASDTRVLLSEKADNQKLDKNLPRETVGSELVVDDLKSNHMKLTETTVGNSSSIDKNLESNLSLPTFFDTSLHLDEDDEMPGNALDVFLPISARNSQKQMDPRNNCVTIKTPRSSGTKNVPTYYQNDGSQLYLLTPNILPPSAGSVQRWLFCDEREDQDVPKCTSGPLLMHTPDQMRQEPGAEDKDMSRHTPGSPLRHGLYKDADTEKKLPCFSEGQTERIKACLDGSQDISQISGPEEKSSFTPLSQIGFQDPASVGRGQQLTLLSIEILAESRGDLLPDPQFDGVNIVALGFQNDCDATIEVVVLLHSKYVPCQRSLDGLSNCKVLNFTDEKHLFKEFTKLVSSSDPDILMGWDIQGGSLGFLAERASHLGLGLLNDLSRTPSNSWINSQDIKISEKSILELDILDTPSQDCCVQESSMIEDEWGRTHASGVHVGGRIVLNLWRLIRGEVKLNLYSVEAVAEAVLRRKVPSLNNNVLTKWFSSGPGQARYQCIKYIVDKAKLNLQILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYVAISPGKQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVGASKTNTLGVSPFSPEQHVVQDLKDQILLTPNGVMFVPSKVQRGILPRLLEEILSTRIMVKQAMKKLSPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLEKAISFVNLQEKWNAKVIYGDTDSMFVLLKGRTVKEAFQIGSEIAAAVTAMNPSPVTLKMEKVYHRCFLITKKRYVGYSYESPDQTEPVFDAKGIETVRRDTCEAVAKIMEQSLRLFFEHQSLLEVKTYLQRQWKRILSGRVSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRVDRRAEPRYAERIPYVVIHGEPGARLADMRLFGLVGADLNLWFAEMPRPIREASVKRAFTSNIHRTRIDSYYLSKHCVLCGGLVQASARLCNQCSANEAAAATAVIGKTSKLEQEMQHLVSICHHCGGGDRLLESGVKCTSISCLVFYERRKVQKELLASTNVAADKGFYPRCTIEWF 1905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03788 1905 CDD DNA_polB_zeta_exo 1074 1324 - -
Vifa5g03788 1905 MobiDBLite consensus disorder prediction 718 745 - -
Vifa5g03788 1905 MobiDBLite consensus disorder prediction 977 1015 - -
Vifa5g03788 1905 SUPERFAMILY DNA/RNA polymerases 1389 1756 IPR043502 -
Vifa5g03788 1905 CDD POLBc_zeta 1350 1767 - -
Vifa5g03788 1905 ProSitePatterns DNA polymerase family B signature. 1569 1577 IPR017964 GO:0000166|GO:0003676
Vifa5g03788 1905 MobiDBLite consensus disorder prediction 991 1006 - -
Vifa5g03788 1905 SUPERFAMILY Ribonuclease H-like 34 1349 IPR012337 -
Vifa5g03788 1905 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 5 1756 IPR030559 GO:0006281|GO:0016035|GO:0019985
Vifa5g03788 1905 PRINTS DNA-directed DNA-polymerase family B signature 1402 1415 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vifa5g03788 1905 PRINTS DNA-directed DNA-polymerase family B signature 1511 1523 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vifa5g03788 1905 PRINTS DNA-directed DNA-polymerase family B signature 1567 1575 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vifa5g03788 1905 FunFam DNA polymerase zeta 1469 1528 - -
Vifa5g03788 1905 FunFam DNA polymerase 30 196 - -
Vifa5g03788 1905 Gene3D DNA Polymerase, chain B, domain 1 29 196 - -
Vifa5g03788 1905 Pfam DNA polymerase family B 1343 1789 IPR006134 GO:0000166|GO:0003677
Vifa5g03788 1905 FunFam DNA polymerase 1084 1385 - -
Vifa5g03788 1905 Pfam DNA polymerase family B, exonuclease domain 1077 1242 IPR006133 -
Vifa5g03788 1905 Gene3D Palm domain of DNA polymerase 1388 1633 IPR023211 -
Vifa5g03788 1905 MobiDBLite consensus disorder prediction 911 934 - -
Vifa5g03788 1905 SMART polmehr3 1075 1581 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vifa5g03788 1905 Gene3D - 1644 1805 IPR042087 -
Vifa5g03788 1905 Pfam C4-type zinc-finger of DNA polymerase delta 1804 1877 IPR025687 -
Vifa5g03788 1905 Gene3D Helix hairpin bin 1468 1528 - -
Vifa5g03788 1905 Gene3D - 1104 1385 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03788 Vifa-Chr5 1218575536 1218597327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03788 6 224 Core DNA Replication Machinery Family AT5G63960 25.000 5.30e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03788 K02350 - gmx:100777934 2752.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03788 5 1218575536 1218597327 Vifa5g03788 5 1218575536 1218597327 ECH