Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa5g03788 | ATGTCCGATTCACAGTCAAATTCAGAGGTTTTCACCGTTCGGATCGTCTCCATAGACCATTACATGGCACCGCCAATCCCCGCCACCGATATCTCTTACAGCACCTTCCAAGGCGGAAAAGTGAACGAAGTTCCTGTGATAAGAGTGTACGGTTCTACTCCCGCTGGCCAGAAAACTTGCTTGCACATACATGGAGCTTTACCTTATTTATATGTGCCGTGTTCAGATATACCACTTCAACTAGACCGAGAAGGTGATGCATACACCTATGTTTTAGCTGCTTCACTCGAGAAAGCTTTGAAGCTTAAAGGCAGTGCTGGTTCATCAAGACAACATGTACATGGCTGCAGCCTTGTACGAGCAAGGAAATTTTATGGATATTGCTCATTCGAAGAGTTTTTTGTAAAGATTTACCTATATTATCCTCAAGATGTCTCTCGTGCAGCAACTCTTCTCTTGGCTGGTGCTGTTCTTGATAAAAGTTTACAGCCTCACGAATCACACATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAATTTGTATGGCATGGGTCATTTACATCTATCAAAGATGAGGTTCCGCCACCCCATGCCGGATTCTATTCACAAGAAATTAGACTTCAATAGCCAGCACGAAAAGGCAGATCTAGGTGCTGATGCATGCTTAGGGTCAAATGAATTTGGTACTTCGGCAAGTGATAAGGCTCACTGTCCTAAGCGTCAAAGCATCTGTGAGCTTGAAGGAGATACTTCTGTAGATGATATTCTTAATCAGCAGTTTAAAATGTTTTCATCTCTCTCACAAACAAGATCAAATGTAAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAGCGGAAACGGACAGGGGTTCACGAGGCTACTATGCCTTCTGATCCTGGTAAACCACTTCCAGAAGATGTCATGAAACTTCTCTCATCTGGTCTTGACTCTGAGAAAAAACTTCTTCAATTGCGCAGTGAAGCTGAGACCACTTTATTTTGCACTCCTTTAGAGAAGGAACTCAGAGAAACAGACATAATAGGCTCAGCATCGCCACCACCATCACTGTGTAAAAATGCCAAACTTCTTAAGGAAGGGACTGACACAAGTCCAAAGTTGTTGAAAATTGGTGAAATGCAATCAGCTGGAAATATTGGAATGTTGGACATTAAGGATGCTGATATGGAAGCACACAATCTTCTCAAGTGGCTTGCGACTTCTCAAACGGAAGAGGATATAAACTCTGATGACGAACTTGCATGTGAAACAGCCTTGAGCCCCTTGCTTCCTGCTGCAACAGTTGATAAGATGCTAGAGAAAGCGAATATAGCTTTCGAGAATGAGTCGCAGCAGGAGTGTCAGGATATTCTAGATTCAATTGATGATACGCTTGAGTTAGACCAACCAAAGGAAAAGCCTTCTCGTTCCGTTGATCACATTTGTCCTGTTGAAGCTTCATCAGGCATCATGATACCCCAAGTTGATGGTTCTAATGATGATGAGTTCCCAAGTCCACGTGCTAGTTTGGCTGGAATCTCTAATGCAGTTGAGGTAAACAATGAATACAAAAGAGCTTCTGAGTACCATTTACTGCAGAATACTGACACAAGTACAGTTCCTGCAGACAAACAGAATAGGAAATGGGGATCTTTGCCTTTTTCCATGACCGGGAAGGTTAATAATGATAGCAAAGATTCTGTTCTCTCCGATCACTTAATCAGAAATGAGGTTAAAAATAGTACTTGTATTAAAAGAAATGTTGCCGAAGGCGCTTCAAATTCAAAAGAAGTTTATAGTTTGGTTAACTGTTCGTTAAGGGACTTGATGAGACGAAAGCGATCCTATCGAGTTGAACATGATGACCGGGAACCTGAAAATGCAAAGAAGCTTATTTTGGACAGGCATGGGGGACCAAAAACATGCCTTTGGCCAAAACAAATTGAATTGGAAGCAATGCAAACCGATGAAGTAGAAACTGAACTCCAGAAAAATTCCGATCATGAAGTGAGAGGTCTTGATTATTTAGTGTGTGGGAAACAGTTGCTTCCATCTGCAAATCGAAGTTCTTCTCCAATGCATGAAGGGCAAGGCCTGCTTGAAACTTCACATTTAAATTATTCCATGGACAAATCTGTGGCTTGGAGGGAGAAAAACCCTAAGGATGAAACAACTTATGCTAAACCTGTAGCTTCTGATGCTTATACCCCTAATCCCTCTCTAGGCACTCAGTTGAGAACTGATGTTGATCATAAAGTCAGAGCTCCTGAGAGGTGTCAGCAAACTGATTATACTGCTTTTGGTAGTAGACAGAACACATTAGTTGATGATGAAGTTCCACGAAAAAGTAACTGCATGGATAGAATTTCTTGTGGTAACATATGTTCTGTGCCGCATGATCAGATGAAGTCTTATGAGCATGCCGTGGGAAAAAGTGCTGCAAGTGACACAAGAGTATTGCTAAGTGAAAAGGCTGATAATCAGAAGCTGGATAAAAATTTGCCGCGTGAGACTGTTGGCTCAGAACTCGTTGTTGATGACCTGAAGAGTAATCACATGAAATTAACTGAAACAACCGTAGGAAATAGCTCTTCAATTGACAAGAATCTCGAAAGTAATTTGTCCTTGCCAACCTTCTTTGATACTAGTTTACATTTGGATGAGGATGATGAAATGCCAGGGAATGCTCTGGATGTTTTTCTTCCTATTTCTGCAAGGAATTCCCAGAAACAGATGGATCCTAGGAACAACTGTGTTACTATTAAAACTCCCAGATCCTCTGGGACAAAGAACGTTCCTACTTACTATCAAAATGACGGCTCTCAACTATACCTATTAACACCTAATATTTTGCCTCCTTCTGCCGGTTCTGTGCAGAGATGGCTATTTTGTGATGAAAGAGAGGATCAGGATGTACCTAAATGCACTTCTGGACCTCTTCTCATGCATACTCCTGATCAAATGCGTCAAGAACCTGGTGCAGAGGATAAGGACATGTCTAGACACACTCCTGGATCTCCTCTTAGGCATGGGCTGTATAAAGATGCTGACACTGAAAAGAAGCTTCCATGCTTTAGCGAAGGACAAACAGAAAGAATAAAAGCATGCCTGGATGGCTCGCAAGATATTTCTCAGATATCAGGCCCGGAGGAGAAATCAAGTTTTACCCCTCTAAGCCAAATTGGATTTCAAGACCCTGCAAGTGTTGGCCGTGGACAGCAATTAACATTACTCAGTATAGAGATTCTTGCAGAATCTAGAGGAGACCTTTTACCTGATCCTCAATTTGATGGGGTAAATATTGTAGCTCTTGGTTTTCAAAACGATTGTGATGCTACTATTGAAGTTGTAGTTCTTTTGCATAGTAAATATGTACCTTGTCAGAGAAGTCTTGATGGTCTATCAAACTGCAAAGTACTGAACTTCACTGATGAGAAGCACTTGTTTAAAGAATTTACGAAGCTTGTGTCGTCATCTGATCCAGATATATTGATGGGCTGGGATATTCAAGGGGGTTCTCTTGGTTTTTTAGCAGAAAGAGCTTCACATCTCGGTTTGGGATTACTTAATGATTTGTCTCGCACTCCATCTAATTCTTGGATTAATTCTCAAGACATCAAAATATCTGAAAAAAGCATCTTGGAACTGGACATCCTGGATACTCCTAGTCAAGATTGTTGTGTACAAGAGAGTTCAATGATCGAGGATGAATGGGGAAGAACACATGCTAGTGGAGTTCATGTTGGTGGAAGAATTGTCCTTAATTTATGGAGATTGATTCGCGGAGAAGTCAAGCTGAATTTGTATTCAGTTGAAGCTGTTGCTGAAGCTGTATTGAGGCGAAAAGTTCCTTCACTTAACAACAATGTGCTGACAAAATGGTTTTCAAGTGGTCCAGGACAAGCAAGATATCAGTGTATCAAATACATTGTGGATAAAGCAAAGCTAAACCTTCAGATATTAAACCAACTTGATATGGTTAATCGAACATCAGAACTTGCTCGCGTCTTTGGAATAGACTTTTTTTCTGTTCTTTCTCGAGGCTCCCAATACCGTGTTGAATCCATGTTTTTGAGGTTGGCCCACACACAAAATTATGTTGCTATCTCGCCGGGAAAACAACAGGTTGCTTCTCAACCTGCCATGGAATGCCTGCCGCTAGTAATGGAACCAGAGTCAGGATTTTATTCAGATCCTGTTGTTGTACTTGACTTCCAATCTTTATATCCGTCAATGATAATTGCATACAATCTTTGCTTTTGTACATGTCTTGGCAAAGTCGGGGCATCAAAGACTAACACACTTGGGGTAAGTCCATTTTCACCAGAGCAACATGTTGTGCAGGATTTAAAAGATCAAATTTTGCTCACTCCAAATGGTGTTATGTTTGTTCCTTCCAAGGTTCAAAGAGGTATACTTCCCCGTCTACTGGAAGAAATTTTATCAACTAGAATAATGGTAAAACAAGCAATGAAAAAGTTGTCTCCTTCAGAACAAGTCCTTCAGCGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTCATATCAAATGTTACATATGGTTACACAGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCGGAACTTGCAGACAGCATTGTTCAATGTGGGCGCTGTACCCTGGAAAAGGCTATATCATTTGTAAATCTACAAGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTACTTAAAGGACGCACTGTCAAAGAGGCCTTCCAAATTGGGAGTGAAATTGCTGCTGCTGTCACTGCTATGAATCCTAGCCCTGTCACCTTGAAGATGGAGAAAGTTTATCACCGTTGTTTCCTCATTACTAAAAAGCGATATGTTGGCTACAGTTATGAAAGCCCTGATCAAACTGAACCTGTTTTTGATGCCAAAGGTATTGAAACAGTACGCAGGGACACATGTGAAGCAGTTGCTAAGATAATGGAGCAATCTTTGAGACTCTTTTTTGAGCACCAGAGTTTATTGGAGGTGAAGACTTATTTGCAACGTCAGTGGAAGAGAATTCTTTCAGGCAGAGTTTCCCTAAAGGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCAACTAAGGCAATGAGGGTTGATCGAAGGGCTGAACCACGTTACGCGGAGAGAATACCTTATGTTGTAATCCATGGAGAGCCTGGAGCCCGTCTGGCTGACATGCGATTATTTGGGCTTGTTGGTGCCGACCTGAACCTGTGGTTTGCAGAGATGCCTCGCCCTATAAGAGAAGCTTCGGTAAAGCGTGCATTCACTTCAAACATCCATCGAACCAGAATTGATTCGTACTATCTCTCAAAACATTGTGTACTCTGTGGTGGGTTGGTCCAGGCATCAGCCCGTTTATGTAATCAATGTTCTGCAAATGAGGCGGCTGCTGCGACAGCAGTGATTGGTAAAACTTCGAAGTTGGAGCAAGAGATGCAACATCTCGTGTCTATATGTCACCACTGTGGAGGCGGCGATAGGCTGCTCGAAAGTGGTGTGAAGTGCACGTCGATTTCATGCTTGGTGTTTTATGAGAGGCGAAAAGTTCAGAAAGAACTACTTGCCTCTACCAATGTTGCTGCAGATAAAGGCTTCTATCCAAGATGCACGATTGAATGGTTTTGA | 5718 | 0.4176 | MSDSQSNSEVFTVRIVSIDHYMAPPIPATDISYSTFQGGKVNEVPVIRVYGSTPAGQKTCLHIHGALPYLYVPCSDIPLQLDREGDAYTYVLAASLEKALKLKGSAGSSRQHVHGCSLVRARKFYGYCSFEEFFVKIYLYYPQDVSRAATLLLAGAVLDKSLQPHESHIPFILQFLVDYNLYGMGHLHLSKMRFRHPMPDSIHKKLDFNSQHEKADLGADACLGSNEFGTSASDKAHCPKRQSICELEGDTSVDDILNQQFKMFSSLSQTRSNVNMVQSLVPIWEEQRKRTGVHEATMPSDPGKPLPEDVMKLLSSGLDSEKKLLQLRSEAETTLFCTPLEKELRETDIIGSASPPPSLCKNAKLLKEGTDTSPKLLKIGEMQSAGNIGMLDIKDADMEAHNLLKWLATSQTEEDINSDDELACETALSPLLPAATVDKMLEKANIAFENESQQECQDILDSIDDTLELDQPKEKPSRSVDHICPVEASSGIMIPQVDGSNDDEFPSPRASLAGISNAVEVNNEYKRASEYHLLQNTDTSTVPADKQNRKWGSLPFSMTGKVNNDSKDSVLSDHLIRNEVKNSTCIKRNVAEGASNSKEVYSLVNCSLRDLMRRKRSYRVEHDDREPENAKKLILDRHGGPKTCLWPKQIELEAMQTDEVETELQKNSDHEVRGLDYLVCGKQLLPSANRSSSPMHEGQGLLETSHLNYSMDKSVAWREKNPKDETTYAKPVASDAYTPNPSLGTQLRTDVDHKVRAPERCQQTDYTAFGSRQNTLVDDEVPRKSNCMDRISCGNICSVPHDQMKSYEHAVGKSAASDTRVLLSEKADNQKLDKNLPRETVGSELVVDDLKSNHMKLTETTVGNSSSIDKNLESNLSLPTFFDTSLHLDEDDEMPGNALDVFLPISARNSQKQMDPRNNCVTIKTPRSSGTKNVPTYYQNDGSQLYLLTPNILPPSAGSVQRWLFCDEREDQDVPKCTSGPLLMHTPDQMRQEPGAEDKDMSRHTPGSPLRHGLYKDADTEKKLPCFSEGQTERIKACLDGSQDISQISGPEEKSSFTPLSQIGFQDPASVGRGQQLTLLSIEILAESRGDLLPDPQFDGVNIVALGFQNDCDATIEVVVLLHSKYVPCQRSLDGLSNCKVLNFTDEKHLFKEFTKLVSSSDPDILMGWDIQGGSLGFLAERASHLGLGLLNDLSRTPSNSWINSQDIKISEKSILELDILDTPSQDCCVQESSMIEDEWGRTHASGVHVGGRIVLNLWRLIRGEVKLNLYSVEAVAEAVLRRKVPSLNNNVLTKWFSSGPGQARYQCIKYIVDKAKLNLQILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYVAISPGKQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVGASKTNTLGVSPFSPEQHVVQDLKDQILLTPNGVMFVPSKVQRGILPRLLEEILSTRIMVKQAMKKLSPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLEKAISFVNLQEKWNAKVIYGDTDSMFVLLKGRTVKEAFQIGSEIAAAVTAMNPSPVTLKMEKVYHRCFLITKKRYVGYSYESPDQTEPVFDAKGIETVRRDTCEAVAKIMEQSLRLFFEHQSLLEVKTYLQRQWKRILSGRVSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRVDRRAEPRYAERIPYVVIHGEPGARLADMRLFGLVGADLNLWFAEMPRPIREASVKRAFTSNIHRTRIDSYYLSKHCVLCGGLVQASARLCNQCSANEAAAATAVIGKTSKLEQEMQHLVSICHHCGGGDRLLESGVKCTSISCLVFYERRKVQKELLASTNVAADKGFYPRCTIEWF | 1905 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa5g03788 | 1905 | CDD | DNA_polB_zeta_exo | 1074 | 1324 | - | - | |
| Vifa5g03788 | 1905 | MobiDBLite | consensus disorder prediction | 718 | 745 | - | - | |
| Vifa5g03788 | 1905 | MobiDBLite | consensus disorder prediction | 977 | 1015 | - | - | |
| Vifa5g03788 | 1905 | SUPERFAMILY | DNA/RNA polymerases | 1389 | 1756 | IPR043502 | - | |
| Vifa5g03788 | 1905 | CDD | POLBc_zeta | 1350 | 1767 | - | - | |
| Vifa5g03788 | 1905 | ProSitePatterns | DNA polymerase family B signature. | 1569 | 1577 | IPR017964 | GO:0000166|GO:0003676 | |
| Vifa5g03788 | 1905 | MobiDBLite | consensus disorder prediction | 991 | 1006 | - | - | |
| Vifa5g03788 | 1905 | SUPERFAMILY | Ribonuclease H-like | 34 | 1349 | IPR012337 | - | |
| Vifa5g03788 | 1905 | PANTHER | DNA POLYMERASE ZETA CATALYTIC SUBUNIT | 5 | 1756 | IPR030559 | GO:0006281|GO:0016035|GO:0019985 | |
| Vifa5g03788 | 1905 | PRINTS | DNA-directed DNA-polymerase family B signature | 1402 | 1415 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 |
Showing 1 to 10 of 25 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa5g03788 | K02350 | - | gmx:100777934 | 2752.62 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vifa5g03788 | 5 | 1218575536 | 1218597327 | Vifa5g03788 | 5 | 1218575536 | 1218597327 | ECH |
Showing 1 to 1 of 1 entries