Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03784 ATGATTAGAGGAACAAGAGGATACATGGCCCCTGAATGGATTTTCCATTTACCAATAACATCTAAAGTAGATGTTTATAGTTATGGGATTGTTGTGTTGGAGATGATAACTGGAAAGAATCCAACATTAATGAATATAGAAGGAGAGGATGGAGAAATGACATACAATGGAAGTTTGATAAGTTGGGTGAGAGAGAAAAAGAGGAGTCAATGTTGGGTAGAAGAAATTTTGGATCCAGCAATTGGGACTAGTTGTGATTTAAGTAAGATGGATATTTTGGTTAGAGTTGCTTTGGAATGTGTAGAGGAAGATATGGATATTAGGCCTAATATGAGTCAGGTGGTTGAGATGCTCCAAAATAATGAAAGAGTTGTTGAGTGA 381 0.3622 MIRGTRGYMAPEWIFHLPITSKVDVYSYGIVVLEMITGKNPTLMNIEGEDGEMTYNGSLISWVREKKRSQCWVEEILDPAIGTSCDLSKMDILVRVALECVEEDMDIRPNMSQVVEMLQNNERVVE 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03784 126 ProSiteProfiles Protein kinase domain profile. 1 124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03784 126 SUPERFAMILY Protein kinase-like (PK-like) 2 120 IPR011009 -
Vifa5g03784 126 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 121 - -
Vifa5g03784 126 Pfam Protein kinase domain 3 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03784 126 Gene3D Transferase(Phosphotransferase) domain 1 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03784 Vifa-Chr5 1216435860 1216436240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03784 2 125 Receptor kinase-like Gene Family AT1G75820 38.462 1.25e-19 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa5g03784 Pkinase 1.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03784 - - gmx:100784287 171.785