Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03761 ATGATGATGACAACAATGGAAGGAATAATGGACAAAGGTGTAATAGATGATGTGATTAGAAGATTGTTAGAAGGAAAAGGTGGAAAACAAGTTCAGCTTTCTGAATCTGAGATTCGTCAACTTTGCATCAACGCTAGACAGATTTTTCTCTCTCAACCTATTCTTCTTGATCTTCGTGCTCCAATCCGCATTTGCGGTGATATACATGGTCAGTACCAAGATTTATTGAGACTCTTTGAATACGGCGGTTTTCCTCCATCTGCGAACTACTTGTTTCTCGGCGATTATGTTGACAGAGGGAAGCAAAGTTTGGAGACAATATGCTTGCTTTTGGCTTACAAAATAAGATATCCGGACAAAATTTTTCTCTTAAGAGGAAACCACGAAGATGCAAAGATAAACCGAATATATGGTTTTTACGACGAATGTAAAAGGAGGTTCAATGTTAGGCTATGGAAGATATTCACCGACTGTTTTAACTGTTTGCCGGTAGCTGCACTCATTGACGACAAAATACTTTGTATGCATGGAGGATTGTCTCCTGAGTTACAAAGTTTAGATCAGATACGAGAGGTTGCGAGGCCTACCGAAATTCCTGATAATGGTCTCTTGTGTGATCTGCTTTGGTCTGATCCCGATTCTAGTTCCGAAGGTTGGCAAGATAGTGACCGAGGTGTCTCGTGTACTTTTGGACCTGATGTTGTCGCGGATTTTTTGGATAAAAATGATCTTGATCTTATATGCAGGGGTCATCAGGTTGTCGAGGATGGATATGAGTTTTTCGCTAAACGGAGATTAGTCACGATATTCTCTGCCCCAAATTATGGCGGAGAATTTGACAACGCCGGTGCATTATTATCCGTTGATGAATCTCTTGTATGTTCCTTTGAGATACTAAAGCCCGCTGATAAAGAAGTAGGAACAAGTTCATCAAAAATGAATTTTAAGAAGCCCCCAACATTGGGATAA 969 0.4025 MMMTTMEGIMDKGVIDDVIRRLLEGKGGKQVQLSESEIRQLCINARQIFLSQPILLDLRAPIRICGDIHGQYQDLLRLFEYGGFPPSANYLFLGDYVDRGKQSLETICLLLAYKIRYPDKIFLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDDKILCMHGGLSPELQSLDQIREVARPTEIPDNGLLCDLLWSDPDSSSEGWQDSDRGVSCTFGPDVVADFLDKNDLDLICRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDESLVCSFEILKPADKEVGTSSSKMNFKKPPTLG 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03761 322 Pfam Serine-threonine protein phosphatase N-terminal domain 15 59 IPR031675 -
Vifa5g03761 322 ProSitePatterns Serine/threonine specific protein phosphatases signature. 124 129 IPR006186 GO:0016787
Vifa5g03761 322 PRINTS Serine/threonine phosphatase family signature 243 263 IPR006186 GO:0016787
Vifa5g03761 322 PRINTS Serine/threonine phosphatase family signature 186 213 IPR006186 GO:0016787
Vifa5g03761 322 PRINTS Serine/threonine phosphatase family signature 157 183 IPR006186 GO:0016787
Vifa5g03761 322 PRINTS Serine/threonine phosphatase family signature 90 117 IPR006186 GO:0016787
Vifa5g03761 322 PRINTS Serine/threonine phosphatase family signature 265 281 IPR006186 GO:0016787
Vifa5g03761 322 PRINTS Serine/threonine phosphatase family signature 123 147 IPR006186 GO:0016787
Vifa5g03761 322 PRINTS Serine/threonine phosphatase family signature 61 88 IPR006186 GO:0016787
Vifa5g03761 322 SUPERFAMILY Metallo-dependent phosphatases 12 305 IPR029052 -
Vifa5g03761 322 SMART pp2a_7 33 303 IPR006186 GO:0016787
Vifa5g03761 322 CDD MPP_PP1_PPKL 14 301 - -
Vifa5g03761 322 FunFam Serine/threonine-protein phosphatase 6 311 - -
Vifa5g03761 322 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 19 309 - -
Vifa5g03761 322 Gene3D - 8 310 IPR029052 -
Vifa5g03761 322 Pfam Calcineurin-like phosphoesterase 62 253 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03761 Vifa-Chr5 1207578942 1207581091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03761 56 246 Calmodulin-binding Proteins AT5G63870 34.071 1.19e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03761 K06269 - gmx:100805030 622.083