Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03756 ATGATTGCACCTGCAGCAACAAGCTTGTTTAAGATTCTTCTCAAGTATAGGCCTGAGGACAAAGAAGAAAAGAAGGATAGGCTTTTGAAAAGGGCTCAGGCAGAGTCTGAGGGTAAAATAGTTGAGACAAAGAAGCCTATTAATGTCAAGTATGGTCTCAATCATGTTACCTACCTCATTGAGCAGAATAAATCCCAGCTTGTTGTGATTGCTCATGATGTTGACCCAATTGAATTGGTTATCTGGCTTCCAGCATTGTGTAGGAAAATGGAAATTCCATACTGTATTGTTAAGGGCAAGGCTTGCCTTGGAACTGTTGTCCATAAGAAAACTGCAGCTGTTTTGTGCTTGACAACTGTTAAAAATGAAGATAAAATGGAGTTTAGCAGGGTCCTTGAAGCAATCAAGGCAAACTTCAATGACAAGTATGAAGAGTACAGGAAGAAGTGGGGTGGTGGAATCATGGGTTCCAAATCCCAAGCCAAAACTAAGGCGAAGGAAAGGCTTATTGCCAAGGAAGCTGCCCAGAGGATGACTTAG 540 0.4167 MIAPAATSLFKILLKYRPEDKEEKKDRLLKRAQAESEGKIVETKKPINVKYGLNHVTYLIEQNKSQLVVIAHDVDPIELVIWLPALCRKMEIPYCIVKGKACLGTVVHKKTAAVLCLTTVKNEDKMEFSRVLEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERLIAKEAAQRMT 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03756 179 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 36 127 IPR004038 -
Vifa5g03756 179 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 12 162 - -
Vifa5g03756 179 ProSitePatterns Ribosomal protein L7Ae signature. 87 104 IPR004037 GO:0042254|GO:1990904
Vifa5g03756 179 SUPERFAMILY L30e-like 9 150 IPR029064 -
Vifa5g03756 179 Gene3D - 3 173 IPR029064 -
Vifa5g03756 179 PRINTS Ribosomal protein L7A family signature 11 24 IPR001921 -
Vifa5g03756 179 PRINTS Ribosomal protein L7A family signature 106 130 IPR001921 -
Vifa5g03756 179 PRINTS Ribosomal protein L7A family signature 138 158 IPR001921 -
Vifa5g03756 179 PRINTS Ribosomal protein L7A family signature 45 65 IPR001921 -
Vifa5g03756 179 Coils Coil 178 179 - -
Vifa5g03756 179 PRINTS Ribosomal protein L7A/RS6 family signature 49 63 IPR018492 -
Vifa5g03756 179 PRINTS Ribosomal protein L7A/RS6 family signature 68 81 IPR018492 -
Vifa5g03756 179 PRINTS Ribosomal protein L7A/RS6 family signature 84 94 IPR018492 -
Vifa5g03756 179 PRINTS Ribosomal protein L7A/RS6 family signature 94 108 IPR018492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03756 Vifa-Chr5 1206889258 1206890086 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03756 6 179 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 86.782 9.39e-112 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03756 K02936 - fve:101294198 306.219