Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03743 ATGGGAGAGAGTGGTAAAAATAAGAGAATCGCAATAATTGGCGTATCTACGTTCTTATTAGTGGCTATGGTTGTGGCGGCCGCGGTTAGTGTTAGTCTCAGCAAAAAGGAAGCGGTAGAAGATTCAAAGGATGCACATCTATCTTCATCAATGAAAGCTGTTAAAAGTCTTTGTGCACCAACAGATTACAAGGAAGAATGCGAGGAGAGTCTAACATCACAAGCTGGAAACATAACTGATCCAAGAGAACTCATCAAAATCGCCTTCAACGTGACCATCACAAAAATAGGCCTAGAGCTTGAAAAAACTCAACTCCTGAAAGATGTTGAAAAAGATCCAAGAACAAGTGATGCATATGACACATGTAAAGAACTCATGCATCTTTCGATTGAGGAATTCACAAGGTCGTTGGAAAGGTTTAGTCGTTTTGACCTTAACAACATCGAGAGAATCCTCGCGAGTCTTAAGGTTTGGTTGAGTGGTGCTATAACATACCAAGAAACTTGTTTGGATGCTTTTGAGAACACTACTGGTGATGCTGGTCAGAAAATGCAGGAGATTTTGAAAGCATCTATGCATATGAGTAGTAATGGTCTTTCCATAATCAACGAACTTTCCAAGGCCTTGACAAACATGAAACCTCCAACTCGTCGTCTTTTGGATGAATCTGAGGTTGATCCCGATGTTATTGGTCATGGTGATTTTGAGCTTCCTGAATGGGTTGAGGATCGCGTTGGTGTTAGGAAACTACTTAAAATGACCGGAAGAAAAATGAATGCTCAACTTGTTGTTGCCAAGGATGGAAGTGGAAATTGTACCACAATCAATGAAGCTCTTCGCCGTGTTCCCAAAAAGAACTTGAGGCCTTATGTTATTTACATTAAGGAAGGTGTTTATGCTGAATACGTTGAAGTTCCTAGAAACTTGACTCACGTCGTTTTCCTTGGTGATGGTGCTAAAAAAACACGTATTACTGGTAACAAGAACTTCGTTGATGGTATTGGTACCTTCAGAACCGCAACCGTTGCTGTTCTTGGAGATTTCTTTGTTGCACTAGGTATCGGTTTTGAAAACACTGCTGGAGCAATAAAGCATCAAGCAGTTGCATTGAGAGTCCAATCAGACAGATCAATCTTCTACAAATGTAGAATGGACGGTTACCAAGATACACTTTATTGTCACACCATGCGTCAATTCTATCGTGACTGCATCATATCTGGAACCATAGACTTTGTCTTTGGAGATGCCGTTGCTGTTCTACAAAACTGCACATTCGTTGTCAGAAGGCCAATGGAAAACCAACAATGTATTGTGACAGCACAAGGCAGGAAGGAGAAAACTCAACCATCAGGACTAGTCATTCAAGGAGGTTCTATTGTGTCTGATCCTGGCTACTATCCAGTTAGGTTTGACAACAAGGCTTACTTGGCTCGTCCTTGGAAGAATTTCTCAAGAACCGTTTTCATGGATACATACATCGGTGACTTGATTACACCTGATGGTTATATGCCATGGCAAACACTTCAAGGAATAACAGGAACTGAAACCTGTTTCTATGCTGAGTTCAATAACCGCGGCCCTGGTTCTGATATCTCAAAGCGCGTAAAATGGACAGGTGTTAAAACTATTACATCTGAAGGAGCATCTGGTTTCTTGCCATCCAAGTTTTTCCTCGGAGACGATTGGATTCGAGTTACAAGTATTCCTTACTATCCAGGAGGAGCTACTGGTTCTTCTATGGTACCAACTCATAAAAGTTAA 1761 0.4117 MGESGKNKRIAIIGVSTFLLVAMVVAAAVSVSLSKKEAVEDSKDAHLSSSMKAVKSLCAPTDYKEECEESLTSQAGNITDPRELIKIAFNVTITKIGLELEKTQLLKDVEKDPRTSDAYDTCKELMHLSIEEFTRSLERFSRFDLNNIERILASLKVWLSGAITYQETCLDAFENTTGDAGQKMQEILKASMHMSSNGLSIINELSKALTNMKPPTRRLLDESEVDPDVIGHGDFELPEWVEDRVGVRKLLKMTGRKMNAQLVVAKDGSGNCTTINEALRRVPKKNLRPYVIYIKEGVYAEYVEVPRNLTHVVFLGDGAKKTRITGNKNFVDGIGTFRTATVAVLGDFFVALGIGFENTAGAIKHQAVALRVQSDRSIFYKCRMDGYQDTLYCHTMRQFYRDCIISGTIDFVFGDAVAVLQNCTFVVRRPMENQQCIVTAQGRKEKTQPSGLVIQGGSIVSDPGYYPVRFDNKAYLARPWKNFSRTVFMDTYIGDLITPDGYMPWQTLQGITGTETCFYAEFNNRGPGSDISKRVKWTGVKTITSEGASGFLPSKFFLGDDWIRVTSIPYYPGGATGSSMVPTHKS 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03743 586 SUPERFAMILY Pectin lyase-like 259 572 IPR011050 -
Vifa5g03743 586 CDD PMEI-like_3 56 207 - -
Vifa5g03743 586 Gene3D - 255 574 IPR012334 -
Vifa5g03743 586 NCBIfam pectinesterase inhibitor domain 22 205 IPR006501 GO:0004857
Vifa5g03743 586 FunFam Pectinesterase 50 206 - -
Vifa5g03743 586 PANTHER PECTINESTERASE 15 564 - -
Vifa5g03743 586 Pfam Plant invertase/pectin methylesterase inhibitor 53 201 IPR006501 GO:0004857
Vifa5g03743 586 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Vifa5g03743 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 207 IPR035513 -
Vifa5g03743 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 206 IPR035513 -
Vifa5g03743 586 SMART PMEI_2 49 201 IPR006501 GO:0004857
Vifa5g03743 586 FunFam Pectinesterase 255 574 - -
Vifa5g03743 586 Pfam Pectinesterase 262 559 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03743 Vifa-Chr5 1204635249 1204637115 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03743 3 583 Carbohydrate Esterase AT3G05610 48.211 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03743 K01051 - gmx:100801686 877.47