Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03742 ATGGCATTTCTTGTAAATTTCCTTTTCGTTCTCATCCTTTTTCCTTCATTTGATCAGGTTCTCTCATTCCAAGATGAATTTCCCTCAGAAATGCAAACCCAAGACATGCAAGCTTTGATTGCACAAGCCTGCATGGATATTGAAAACCAAAACTCGTGCCTCACAAACATTCATAACGAGCTAACGAAAACTGGCCCTCCGAGTCCGACTTCAGTCATTAATGCGGCACTCAGAACCACAATCAATGAAGCCATAGGTGCAATCAACAACATGACGAAGATCAGTACTTTTTCTGTTAATAACCGCGAGCAACTTGCAATAGAAGATTGCAAGGAGCTTCTTGATTTCTCCGTATCAGAGCTTGCGTGGTCGTTAGGTGAGATGAGGAGAATTCGAGCTGGCGACAGAACCGCGCAATACGAGGGAAACCTCGAAGCTTGGCTAAGTGCGGCACTTAGCAACCAAGACACGTGTATTGAAGGCTTCGAAGGCACTGATAGACGTCTCGAGAGTTACATTAGTGGAAGCTTAACACAAGTAACACAGCTTATCAGTAATGTTCTGTCTTTGTACACTCAGCTTAATCGCTTACCATTTAGGCCTCCGAGGAACACTACCCTGCATGATGAAAACTTGGAGTTTCCTGAATGGATGACCGAGGCTGATCAAGAGCTTCTTAAATCTAAGCCTCGCGGTACCGTTGCAGATGCGGTTGTTGCGTTGGACGGGAGCGGTCACTACCGTACAATCAACGAGGCTCTTAATGCAGCTCCGAGTCATAGCAATAGGAGGCATGTTATCTATGTGAAGAAGGGAATTTACAAGGAGAATGTTGATATGAAGAAAAAGATGACCAACATCATGATAGTTGGCGACGGTATTGGCCAAACCATTATCACAAGCAATCGCAATTTCATGCAAGGATGGACAACTTTTCGAACTGCCACGTTTGCTGTATCTGGGAAGGGTTTCATTGCGAGGGACATGACATTCCGGAACACAGCTGGACCAGTAAACCATCAAGCCGTGGCACTGCGTGTGGATTCCGACCAATCTGCATTCTTTAGGTGTAGCGTAGAAGGGCACCAAGACACGCTTTACGCACACTCGCTGAGACAATTCTACCGCGAATGCGAAATATATGGAACCATAGACTTCATTTTTGGCAATGGAGCTGCTGTCCTACAAAACTGCAAGATATACACAAGAGTCCCACTTCCATTACAAAAGGTTACAATCACAGCTCAAGGTAGGAAAAGTCCTCATCAAAGCACAGGGTTTACAATCCAAGATAGCTATGTTTTGGCCTCGCAACCTACATATTTGGGAAGGCCATGGAAACAATATTCTAGAACAGTTTACATTAACACATACATGAGTAGTATGGTTCAACCTCGAGGCTGGCTCGAGTGGCTTGGAAACTTTGCATTGGACACTCTCTGGTACGGCGAATACAGAAATTACGGTCCTGGTTCATCACTTGCAGGTAGGGTTAATTGGCCTGGTTATCATGTCATCAAAGACGCTTCTACCGCCGGTTTCTTTACGGTTAACCGCTTTCTCAACGGCGGTTCATGGTTGCCTAGAACAGGTATCAAGTTCACAGCAGGGTTGACCAATTGA 1623 0.4516 MAFLVNFLFVLILFPSFDQVLSFQDEFPSEMQTQDMQALIAQACMDIENQNSCLTNIHNELTKTGPPSPTSVINAALRTTINEAIGAINNMTKISTFSVNNREQLAIEDCKELLDFSVSELAWSLGEMRRIRAGDRTAQYEGNLEAWLSAALSNQDTCIEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLNRLPFRPPRNTTLHDENLEFPEWMTEADQELLKSKPRGTVADAVVALDGSGHYRTINEALNAAPSHSNRRHVIYVKKGIYKENVDMKKKMTNIMIVGDGIGQTIITSNRNFMQGWTTFRTATFAVSGKGFIARDMTFRNTAGPVNHQAVALRVDSDQSAFFRCSVEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYVLASQPTYLGRPWKQYSRTVYINTYMSSMVQPRGWLEWLGNFALDTLWYGEYRNYGPGSSLAGRVNWPGYHVIKDASTAGFFTVNRFLNGGSWLPRTGIKFTAGLTN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03742 540 SMART PMEI_2 35 190 IPR006501 GO:0004857
Vifa5g03742 540 SUPERFAMILY Pectin lyase-like 236 537 IPR011050 -
Vifa5g03742 540 PANTHER PECTINESTERASE 12 528 - -
Vifa5g03742 540 CDD PMEI-like_4 53 195 - -
Vifa5g03742 540 ProSitePatterns Pectinesterase signature 1. 261 280 IPR018040 -
Vifa5g03742 540 FunFam Pectinesterase 231 538 - -
Vifa5g03742 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 195 IPR035513 -
Vifa5g03742 540 FunFam Pectinesterase 37 196 - -
Vifa5g03742 540 Pfam Plant invertase/pectin methylesterase inhibitor 39 190 IPR006501 GO:0004857
Vifa5g03742 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 194 IPR035513 -
Vifa5g03742 540 NCBIfam pectinesterase inhibitor domain 4 194 IPR006501 GO:0004857
Vifa5g03742 540 Pfam Pectinesterase 236 523 IPR000070 GO:0030599|GO:0042545
Vifa5g03742 540 Gene3D - 232 538 IPR012334 -
Vifa5g03742 540 ProSitePatterns Pectinesterase signature 2. 380 389 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03742 Vifa-Chr5 1204625710 1204627443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03742 22 540 Carbohydrate Esterase AT3G05620 63.396 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03742 K01051 - gmx:100810565 946.421