Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03734 ATGGGGCATTTATCCTCTATGTTCAATGGTTTGGCTAAGTCGTTTTCGTTAAGGAAAGGAGGGAATTCTGTGAGATGTGAAAGGAGAGAAGCTGTTGAAGAAATGGCGAAAGAAGCTAAGAAAAATGATTTGATTTTGTGTAGCTCTGGTGTTGTTAATGTTGATGGTTCTAACAACTTTGCGTCTGTTTTCTCTAAAAGAGGTCAGAAAGGAACCAACCAAGATTGTTGCATAGTTTGGGAGGAATTTGGATGCCAAGATGACATGATATTCTGTGGAATGTTCGATGGGCATGGACCATGGGGTCATTTTGTAGCGAAAAGAGTAAGAGAGGCAATGCCAAGATCTTTGCTATGCAATTGGCAAGAGACACTTGCTGCACAATCTTCATCATCACTTGATAATGATAATGTAAAGGAAATTGCAGACAACAAGCAACAAAGATTCAATATATGGAAACACTCTTACTTGAAAACTTGTGCTTCCATCGATCAAGAACTCGAACATTCTCGAAAGTTTGATTCGTTTCACAGCGGAACAACTGCCCTCTCAATTGTTAGACAGGGCGAAACAATTATCATAGCAAATGTTGGCGATTCTCGTGCAGTATTAGCTACAACATCAGATGATGGAAGTTTGGTAGCCGTTCAACTAACAGTTGATTTCAAGCCGAATTTACCTCAAGAAGCAGAGAGAATAACTCAGTGTCAAGGACGCGTGTTCTGTTTAGACGATGAACCGGGCGTGCATAGGGTATGGTTACCCGATGTAGAATCTCCGGGACTTGCCATGTCAAGAGCTTTTGGTGATTATTGTCTTAAAGAATATGGTCTGATTTCAGTGCCTGAAGTGACTCAAAGGAGTATAAGCAGTAAAGATCAGTTTGTTGTGCTTGCATCGGACGGGGTTTGGGATGTGATCTCGAATCAAGAAGCGGTAGATATTGTATCTTCAACAGAAGACAAAACAAAATCGGCTAAATGTTTGGTGCAATGTGCAGTTCATGCATGGAAACGGAAGAGAAGGGGTATTGCCATTGATGATATTTCAGCTATTTGTCTCTTTTTTCATTCTTCTCATTCTTCTGAGCAAGTTAGCACAATTGAAACTTTTAAATAG 1119 0.4021 MGHLSSMFNGLAKSFSLRKGGNSVRCERREAVEEMAKEAKKNDLILCSSGVVNVDGSNNFASVFSKRGQKGTNQDCCIVWEEFGCQDDMIFCGMFDGHGPWGHFVAKRVREAMPRSLLCNWQETLAAQSSSSLDNDNVKEIADNKQQRFNIWKHSYLKTCASIDQELEHSRKFDSFHSGTTALSIVRQGETIIIANVGDSRAVLATTSDDGSLVAVQLTVDFKPNLPQEAERITQCQGRVFCLDDEPGVHRVWLPDVESPGLAMSRAFGDYCLKEYGLISVPEVTQRSISSKDQFVVLASDGVWDVISNQEAVDIVSSTEDKTKSAKCLVQCAVHAWKRKRRGIAIDDISAICLFFHSSHSSEQVSTIETFK 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03734 372 ProSiteProfiles PPM-type phosphatase domain profile. 60 356 IPR001932 -
Vifa5g03734 372 SMART PP2C_4 51 354 IPR001932 -
Vifa5g03734 372 FunFam Probable protein phosphatase 2C 34 51 358 - -
Vifa5g03734 372 PANTHER PROTEIN PHOSPHATASE 42 354 IPR015655 GO:0004722|GO:0006470
Vifa5g03734 372 Pfam Protein phosphatase 2C 73 326 IPR001932 -
Vifa5g03734 372 Gene3D - 51 359 IPR036457 -
Vifa5g03734 372 CDD PP2Cc 59 356 IPR001932 -
Vifa5g03734 372 SUPERFAMILY PP2C-like 58 357 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03734 Vifa-Chr5 1201201161 1201203210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03734 1 357 PP2C-type Phosphatase Gene Family AT3G05640 71.588 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03734 - - gmx:100808955 615.15