Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03729 ATGTTGAAGGTTTTTGATTTGCAGGGTATTAGAAGACGTTATGTTGTTTCTGTTAGAAAGGTTTTGACTATTTTTAGGAGATTTGTTGGGGAACAGTTGAAGTTGAGAGAAGGTACTGGTTCTATTGGAAATGATGATGTGCTTGATGCTTTGCTTAATATTTCTTTGGAGGATGGGAAAATTGAGATGGATAAAGATGAGATTGAACATTTGTTGCTGAATATATTTGTTGCAGGAACAGACACAAGCACGTACACACTAGAATGGGCAATGGCGGAGTTAATGCACAATCCAGAAATCATGTCAAAAGTACAAAATGAACTCGAACAAGTTGTTGGCAAAGGTATTCCAGGCGAAGAAACAGACATAGCCAAATTACCATACATGCAAGCAGTTATAAAAGAGACGTTTCGTGTACATCCACCAGTTCCGTTATTACTACCTCCCAAAGCAGAAACAGATGTTGAAATTGGTGACTACATTATTCCAAAAGATGCACAAGTTTTGGTTAATGCTTGGGTTATTGGCAGAGATCCAAGTAAATGGGAGAATCCTAATGCTTTTGTGCCGGAGAGATTTTTCAATTGTGAGATTGATTTTAAAGGACATCATTTTGAGCTTATTCCATTTGGGTCTGGTAGAAGAATTTGTCCTGGTTTGCCTTTGGCTATTAGAATGTTGCCTTTGATGTTGGGATCTTTGGTTAATTGCTTTGATTGGAGACTTGAAGATGGATTGAATGTCGATGATTTGAATAAGGAAGATGAGTATGGGATTACCTTGGAAAAATCTCAACCTGTGAGAATTGTTCCAATCAAATTGACTAAGCAATAA 834 0.3717 MLKVFDLQGIRRRYVVSVRKVLTIFRRFVGEQLKLREGTGSIGNDDVLDALLNISLEDGKIEMDKDEIEHLLLNIFVAGTDTSTYTLEWAMAELMHNPEIMSKVQNELEQVVGKGIPGEETDIAKLPYMQAVIKETFRVHPPVPLLLPPKAETDVEIGDYIIPKDAQVLVNAWVIGRDPSKWENPNAFVPERFFNCEIDFKGHHFELIPFGSGRRICPGLPLAIRMLPLMLGSLVNCFDWRLEDGLNVDDLNKEDEYGITLEKSQPVRIVPIKLTKQ 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03729 277 PRINTS P450 superfamily signature 78 95 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03729 277 PRINTS P450 superfamily signature 208 217 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03729 277 PRINTS P450 superfamily signature 217 228 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03729 277 PRINTS P450 superfamily signature 131 142 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03729 277 PRINTS E-class P450 group I signature 67 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03729 277 PRINTS E-class P450 group I signature 87 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03729 277 PRINTS E-class P450 group I signature 207 217 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03729 277 PRINTS E-class P450 group I signature 171 195 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03729 277 PRINTS E-class P450 group I signature 130 148 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03729 277 PRINTS E-class P450 group I signature 217 240 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03729 277 SUPERFAMILY Cytochrome P450 5 270 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03729 277 Gene3D Cytochrome P450 1 268 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03729 277 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 210 219 IPR017972 GO:0005506|GO:0016705
Vifa5g03729 277 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 1 273 - -
Vifa5g03729 277 FunFam Geraniol 8-hydroxylase 18 270 - -
Vifa5g03729 277 Pfam Cytochrome P450 41 259 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03729 Vifa-Chr5 1199227604 1199228517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03729 1 273 Cytochrome P450 AT2G45550 49.275 1.06e-95 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03729 - K25522 cave:132173603 351.673