Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03727 ATGTCGAAGCAGTTGCCGGTTCCTTTGGCTACCTTGATTGGCCGTGAGCTTCGAAATGAGAAAGTTGATAATCCTTTTGTTAAGTATGGGCAAGCTGGTTTGCCTAAGAAAGGAGAAGATTACTTTCTGATCAAAACGGATTGCCGTAGGGTTCCTGGCGATCCGTCCACTGCATTTTCTGTTTTTGCGGTTTTTGATGGGCATAACGGTATATCGGCTGCTATTTATGCAAAAGAAAACTTGCTTAATAATGTTTTGAGTGCAATACCGCAAGATATCAGCAGGGATGCATGGCTACAGGCCCTGCCCCGCGCTCTAGTTGTTGGTTTTGTGAAGACTGACACTGAGTTTCAGAAGAAGGGGGAAACTTCTGGAACAACAGTTACATTTGTTCTGGTTGATGGATGGACTGTCACTGTTGCATCTGTCGGTGATTCCCGTTGCATATTAGATACTCAGGGAGGTGTAGTTTCTCTCCTGACAGTTGATCACAGACTTGAGGAGAATGTAGAAGAGAGGGAACGTGTTACTGCCAGTGGTGGGGAAGTAGGAAGACTCAATGTATTTGGGGGAAATGCGGTAGGACCTCTTCGCTGCTGGCCTGGTGGACTTTGCCTATCTAGATCAATAGGAGACACAGATGTGGGAGAGTATATTGTGCCAATTCCACATGTTAAACAAGTGAAACTTTCAAATGCCGGTGGAAGGCTTATTATAGCCTCTGATGGTATTTGGGATACTATATCTAATGATACAGCCGCCATGTCATGTCGGGGTCTACCTGCAGAACTTGCTGCTAAGCTAGTAGTTAAGGAAGCTCTAAGATCTAGAGGCTTAAAGGATGATACAACCTGCCTTGTAGTAGATATTATTCCTTCCGACCACCCTGTATTACCACCAACTCCAAGAAAGAAACATAATATGCTAACATCACTCCTCTTTGGAAAGAAATCTGAGAACTCTACAAACAAAGCTACGAGCAAGCTTTCTGCAGTTGGTGTTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTATAGAAAGGCTTGGTAAGGATTTTCCATTTAATAAGAATTCAGAGATTTTCCGCTGTGTGATTTGCCAAGTGGATCAACCCCCTGGGAATGGTCTATCAGTGAACTCCGGACCTTTCTTTTCTCCAGCATCTAAGCCATGGGAAGGCCCATTTCTTTGCACAAACTGTCGAAAGAAAAAAGATGCCATGGAAGGAAAGAGGCCCAGCTCACATTCTGTTACAGCACAGTAA 1269 0.4421 MSKQLPVPLATLIGRELRNEKVDNPFVKYGQAGLPKKGEDYFLIKTDCRRVPGDPSTAFSVFAVFDGHNGISAAIYAKENLLNNVLSAIPQDISRDAWLQALPRALVVGFVKTDTEFQKKGETSGTTVTFVLVDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENVEERERVTASGGEVGRLNVFGGNAVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDTISNDTAAMSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDHPVLPPTPRKKHNMLTSLLFGKKSENSTNKATSKLSAVGVVEELFEEGSAMLIERLGKDFPFNKNSEIFRCVICQVDQPPGNGLSVNSGPFFSPASKPWEGPFLCTNCRKKKDAMEGKRPSSHSVTAQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03727 422 PANTHER PROTEIN PHOSPHATASE 39 289 IPR015655 GO:0004722|GO:0006470
Vifa5g03727 422 CDD PP2Cc 36 290 IPR001932 -
Vifa5g03727 422 FunFam probable protein phosphatase 2C 5 28 295 - -
Vifa5g03727 422 Gene3D - 28 294 IPR036457 -
Vifa5g03727 422 Pfam Protein phosphatase 2C 56 259 IPR001932 -
Vifa5g03727 422 SMART PP2C_4 16 288 IPR001932 -
Vifa5g03727 422 SMART PP2C_SIG_2 43 290 IPR001932 -
Vifa5g03727 422 SUPERFAMILY PP2C-like 30 290 IPR036457 -
Vifa5g03727 422 ProSiteProfiles PPM-type phosphatase domain profile. 25 290 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03727 Vifa-Chr5 1198911438 1198913445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03727 7 420 PP2C-type Phosphatase Gene Family AT1G09160 77.536 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03727 - - gmx:100807886 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03727 5 1198911438 1198913445 Vifa5g03727 5 1198911438 1198913445 ECH