Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03724 ATGGTAAAGGGAGGGAAGGTTAATAGCAAAGGTGGTTTTAGGAAAAGGGTTAGGTCAAAGGGGGGTGGTTCGGATGATTCCGATGAGGATTATGTGGTTTCGGATGATGCGGGGAATGTGTCTGATTGTGGTGAGGATGATTGTTTTTCTTTAGATGGATGTGCGGCGGAGGATAGTTTTGATGGCTTTATAGAAGATGAGGATGTGGGCGAGGTGGAGATTCGAGGGGTGGTGAAATTTAATGGATCGAGGGGTAAAACCAGTGTGAGGCGTCCGGGGAAGAATGTGAGTAAAACTGCGCGGAAGAGACAGAGGATTGAATATGCAGAAGAACTAGATGAGGAGGAAGAAGAAGAAGAAGAAGTAGAAGAAGAAGATGATGAAGATTATGATGAAGAAGAAGAGGAGGAAGACGAAGAAGAAAAAGAAGTGGAAGAAGTAGAGGTAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAAAAGAAGTGGAAGAGGTAGATGGAAATGACGAGGATGAGGATTTCAATTATGATGATGACGAATTTATACCTGATGAAGAAGATTACACAGATGAGGAGGAAGAAGAAAGAAGGGGCGGGAAGAAGAAAAAAGAGGATTTTAATTATGAAGATGAAGACTTTATACTAATGGAAGAAGAAAGAAGGGGCAGGAAGAAGAAAAAGGAGGATTTCAATGATGAAGATGATGAATTTGTACCAACGGAAGAAGAAAGAAGGGGCAGGAGGAAGAAAAAGGAGGATTTCAATTATGAAGATGAGGAATTTATACCAACGGAAGAAGATTACACGGATGAGGAAGAAGAAGAAATGAGGGGAATAACGAAGAAAAATAATGGCATTAAAATGGGCAAGAAGAACACTTTGAAGAAAAGGGTTTCTGCAGCTTCTAGCAGATGTCGAAAAAGGAGTGGTTCTAGAGTTTCAAAGAAGCCTAAGAGAAAGAGAAGAGGAAAGAGTGAAGGATCAAGGAGGAAAGTAAAGTGTGAAGATGCAGACGATTTTTGGGATAATGGACCCGCCATCAGAACAAATAGCAGAAAGAAATCGGGCCAGAAAAGGAGAAGGGTTCTCGTTGAAGATGCCAATTCCTGTTCAGATTGTGAGACTAGACCATCTGATTATGAGTTTACTATTTCTGAAGAAGAAAAAGAACAGGTGAGAGAAGCCAGGGAGTTGTGCGGAAATATAAGAAGAAACTTGAGGAGAGCTTCTCTTCGAATGAAAAATGAAGAGGTTGAAATACATGAAGATCTACATCAGCAACGGAAGCCTCCAGCACAGAAGGGTAAGGAAAAGATAGAGGAATCTCAAGGAAGAAAGGGTAAGGAAAAAGTCGAGGAGTTAAAAATCGAGGTGACAAAGCAGAGATTCAAAACAATCAGTAAGCCCGCACGATCAACAACAGCACAAGAAGCAGTGATACAAGTGCCGGAACGTGATCAGGTTTATCAGCCAACTGAAGAAGAACTGAGGAGTTACATTGATCCATACGAGTCCGTTATTTGTTCAGAGTGCAATCTAGGTGGAGATGATGCCCTCATGCTACTCTGTGATATATGTGATTCTCCTGCGCATACTTATTGTGTTGGTTTGGGGAGAGAAGTACCTGAAGGTAATTGGTACTGTGATGGTTGTAGACCAGTTGCTTTGGCATCTTTAAACTCCCAAGCTCAAGAACGCGGTGCTGATTTAAGAGCTACTACCCAAAGCCAGCCTTCCAGACCATCGCCTGTTCATATACGAGAAAGTATAGACCTGAACTTGATGTCATCACCCTATCCATCGTTTGGTCAAGGGTTTGGGCATCTTTCATCCTCTAGATTTTCGGGCAGAAGTGCCGAAGGTGCTTCTCCGATGTCTGGTGGCGGGGCACCAACTGTATCAGAGAGACGACGGATACACCGTCAAATTCAGCAGCTACGATCAATGGATAGAATGACTTATACAACCGGCAGAGTTAACAATGTTTCAGCTACCAATACAATAAGTAACTTGCATAGCTCTCAAATCGATCAAACTAGGGAGCCAACTTCTCAATATACAATGGCACAGGATGTAGGAACATCCTATCACACATTTTTTGAGGAAAGATTAGGCAACAACATCTCTCCACTAATGCAGAATGGAGATCACTTCTCCACAAGAATAAGCAATTCAATAAGGTCAGTGGTTCAGGATTCAACCATGTTTTCCAACGGGGCTATGAACACAGTTATATGGCCTGGATTTTCGGGGACACGCACGTTATCAGATATTGAACCAATCCACCCGTTCAGCAGCAGATCAAACATTGTCACCGAGCGTAGTAATATTCCTCCAACTATCATAGAAGAAGATAACTTGCACATTGTAAAGGAGCAATTGCAGTCAATGGTTAAAAGCCATCTGAAGAGATTGTCAAAAGATACTGATTTGGATTATAGTACATTCAAAGACATTGCGAGGAGTTCTACACATACAATACTTGCTGCTTGTGGACTCGAGCACAAGACGAGCGAGGTTTGTACGGTGCCTCCACCATCCGTCTGTCCCCACATTGAATTAATTGCTGGTGGACAAACGAGTATGATTAAGGGTTGCTGCTCCTCTTGTTTTGATTCTTTTGTAGGAGATGTGGTTAAAAGGATTTTGGACACAAGAATGTCTTCGCAGTGGTTAAGGTTAGGAATTTAG 2703 0.4206 MVKGGKVNSKGGFRKRVRSKGGGSDDSDEDYVVSDDAGNVSDCGEDDCFSLDGCAAEDSFDGFIEDEDVGEVEIRGVVKFNGSRGKTSVRRPGKNVSKTARKRQRIEYAEELDEEEEEEEEVEEEDDEDYDEEEEEEDEEEKEVEEVEVEEEEEEEKEEEEEEKEVEEVDGNDEDEDFNYDDDEFIPDEEDYTDEEEEERRGGKKKKEDFNYEDEDFILMEEERRGRKKKKEDFNDEDDEFVPTEEERRGRRKKKEDFNYEDEEFIPTEEDYTDEEEEEMRGITKKNNGIKMGKKNTLKKRVSAASSRCRKRSGSRVSKKPKRKRRGKSEGSRRKVKCEDADDFWDNGPAIRTNSRKKSGQKRRRVLVEDANSCSDCETRPSDYEFTISEEEKEQVREARELCGNIRRNLRRASLRMKNEEVEIHEDLHQQRKPPAQKGKEKIEESQGRKGKEKVEELKIEVTKQRFKTISKPARSTTAQEAVIQVPERDQVYQPTEEELRSYIDPYESVICSECNLGGDDALMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQAQERGADLRATTQSQPSRPSPVHIRESIDLNLMSSPYPSFGQGFGHLSSSRFSGRSAEGASPMSGGGAPTVSERRRIHRQIQQLRSMDRMTYTTGRVNNVSATNTISNLHSSQIDQTREPTSQYTMAQDVGTSYHTFFEERLGNNISPLMQNGDHFSTRISNSIRSVVQDSTMFSNGAMNTVIWPGFSGTRTLSDIEPIHPFSSRSNIVTERSNIPPTIIEEDNLHIVKEQLQSMVKSHLKRLSKDTDLDYSTFKDIARSSTHTILAACGLEHKTSEVCTVPPPSVCPHIELIAGGQTSMIKGCCSSCFDSFVGDVVKRILDTRMSSQWLRLGI 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03724 900 MobiDBLite consensus disorder prediction 304 331 - -
Vifa5g03724 900 MobiDBLite consensus disorder prediction 197 237 - -
Vifa5g03724 900 MobiDBLite consensus disorder prediction 617 639 - -
Vifa5g03724 900 MobiDBLite consensus disorder prediction 426 454 - -
Vifa5g03724 900 MobiDBLite consensus disorder prediction 110 196 - -
Vifa5g03724 900 MobiDBLite consensus disorder prediction 332 346 - -
Vifa5g03724 900 MobiDBLite consensus disorder prediction 262 277 - -
Vifa5g03724 900 PANTHER F18C1.6 PROTEIN 203 447 - -
Vifa5g03724 900 Coils Coil 389 409 - -
Vifa5g03724 900 Pfam PHD-finger 511 557 IPR019787 -
Vifa5g03724 900 SUPERFAMILY FYVE/PHD zinc finger 483 557 IPR011011 -
Vifa5g03724 900 ProSiteProfiles Zinc finger PHD-type profile. 509 558 IPR019787 -
Vifa5g03724 900 MobiDBLite consensus disorder prediction 1 45 - -
Vifa5g03724 900 SMART PHD_3 511 556 IPR001965 -
Vifa5g03724 900 Coils Coil 98 172 - -
Vifa5g03724 900 MobiDBLite consensus disorder prediction 83 372 - -
Vifa5g03724 900 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 561 IPR013083 -
Vifa5g03724 900 MobiDBLite consensus disorder prediction 244 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03724 Vifa-Chr5 1197024989 1197028012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03724 506 555 C2H2 Transcription Factor Family AT3G01460 46.154 5.30e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa5g03724 PHD 2.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03724 - - psat:127132436 1154.04